Pfus011435.1
Basic Information
- Insect
- Polistes fuscatus
- Gene Symbol
- -
- Assembly
- GCA_010416935.1
- Location
- QUOI01000008.1:9070196-9074278[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 7.5e-06 0.0006 19.9 4.4 2 23 243 264 242 264 0.97 2 12 0.00039 0.031 14.5 2.0 1 23 269 291 269 291 0.97 3 12 2.2e-05 0.0017 18.4 0.6 2 23 301 322 300 322 0.97 4 12 0.0011 0.09 13.0 5.4 1 23 420 442 420 442 0.98 5 12 0.0013 0.11 12.8 1.7 1 22 447 468 447 471 0.90 6 12 3.5e-06 0.00027 20.9 0.9 1 23 510 533 510 533 0.95 7 12 2.1e-06 0.00017 21.6 1.3 1 23 566 588 566 588 0.98 8 12 0.00013 0.01 15.9 4.0 1 23 602 624 602 624 0.96 9 12 0.00012 0.0098 16.0 4.7 1 23 630 652 630 652 0.98 10 12 0.0011 0.087 13.0 3.2 1 23 658 680 658 680 0.98 11 12 3.8e-05 0.003 17.7 6.5 1 23 686 708 686 708 0.98 12 12 0.00017 0.014 15.6 0.3 1 21 714 734 714 735 0.93
Sequence Information
- Coding Sequence
- atgacaaaccgagataattatttatgccGTGTTTGTCTATCGTCGAGCAACGACAATCAACCTATCTTTTCCATCGAGGAAAATTCTTCGAAAGATAAGAGCGTCCACGATTTGTCCGAAAAGTTATGGCTATGCGGAGGTATCGAGGTTGCCGAAGACGACGGATTACCCGaacatatttgtataaaatgcATTCTCAAAGTCAATGCAGCTCACGAACTCAGAGAACAGTGTCAACGAGCGGATGTCAAGTTGAGACAGCTATATGGCAAAGCGATCGAGAAAGCTGACACTGTCAAagATCAATATTGTCAAACCGAAGAAGAACACTTTCCACTTCTAACGAAAGAAGAggataattattctttcgtaCGCTACCAAGATTCTCTTTCGGACGAAAAAAGTAACGTCCGAATCTTGAAAGAATCCGATGGTAATATTAAGACTGGCAATGAAATATTGTCagatattgataataaattagaacGATCGACGCACGAGGTACCTGTTGTTAAAAGAGAAGCTTATCGTACGAGAAGACTGACGATGTTCAAAAGAGTTACCTCCATGGAAAATTTGAGAAATCACAAAGAAAGACAAAGgcagtatataaaaaaaaatgggaaTACAAAATACGACAGTGGCGAAAAGGATGTGCTATTAAATGCGGAAAATGCGTGTAACAAGGTAGTCAGAGTTTCCGCTACGCGTTCCAATTTAAATCTCAAATGTACTCAATGCAACAGATGTTATTCCAGTAAAAAATCCTTAGAGAGGCATATTTTAACTCATAACGAAGCAAAATTTCAATGCCAAAAGTGTAACAAACAATTCGTTCATATCGATGAACTACTCCAACACGGTAAACTTCACAGAtctaatgaaaaatcaaaGTTAGTACCgtgtaaaatatgtaataaaagttTTAGGAAAACTGATACTATGGTACGACATTTGAATGTTCACAAAAGAGTCAATCCCAAGGAAGTATTTTCCATACTCAAGGAAATTAGAGATAGAAGGAAATTGGAGAACAACGTGCAATCTTTAGAAATGAATGATCGATCTATCCTCTCTCTGGAAGATCAAAATTTAGATGATCGAAAGGCATTGGGTAATAACGCTCTCGACGATGGGATCCAAAAATCAACCAAACAACAAGTATCGGACAcggaggaaaaaataaatcatttctatgCGTCCAGTTCCGAGTCTAATAGCGATAATAAATCTGATTCTTTCGATGGTATACCCGTTTATCGTTGCAAGCATTGCATCAAATCTTATACAAAGGAGACATCTCTTAAGCGTCATTTGTTAAAACAcgacgaaagaaaatttgtttgcaACGTTTGCAACATGAAATTCTTTCGTCAAGATAGACTTAAAAGCCATAGAGACAGATACGGTCACGACGAGGATAAAGATTGTTCTATACCTCAAAAACCGCCGGACGACAAGTTggctattaaattaattaatagttgGATTAGAGAAGAATTGGATTCGGATAACGAAGGTAAGGGATTCCCCTGTGAAATTTGTGGTAAATCCTACGATACGAAAAAATCCTTATTGAAACATCAGACGAATACTCACGAAGtacaagaagaaaattgtttcaatTGCGGTAAGGAATGTAGTTGCTCCATCAAGTGCAAAGGgaatcgaaaaaataatgaaaaagagaaaaactttACGTGCTTAGAATGTAATAAaagttttgaaaaagaaatcaaattacAAAGACATATGCGAATACACGAACGTACGAAAGAGCAAAAAGATTcgaattttaaacgatttttgTGTCATATTTGCAGTAAAACTTTTAGACAAAATACAGGTCTTATGTTTCACATGAGAACGCATACTGGATATAAACCTCATGTTTGCAAATATTGCGGACGAGGATTTACGTCCAATTCAAATTGCATTAATCACGAAAGAACGCATACCGGCGATAGGCCATTCGTTTGTCACTTTTGTAGCGCCGCTTTTGCTAAATCTTGCACTCTCAAAGCGCATATTACTACGCATACCGGCGAAGCTAATTATCACTGCAAAACTTGCGGCAAGTCTTTCagacgattaaaatatttgaaagagcATAGATTCACCCATACAGGAGAGAAACCGTATGCCTGCAAAATATGTGGAACAGCTTATAGCCATTCCGGCAGCTTATTCGTtcacgaaaaaaaatgtaaagccCAGTACAATAATTATCAAACTACGACGCCAACTCAAAATACGCAAAGTTACGCTCAACCTCAAGGAAACGTTTGCGCCAACACACCCGTTATACCTCCTATTATTTCAACACTGCCGCAAtctcatataaataatattaatagtactTTAGGTTCTCAAACGAATAAAACTTATATCGACAGCGTGCAAAGAATGAACGCGcacgctgctgctgctgccgctgcCGCGGCTGTGGTGGGTACGTCTTCGTTGCACGTACATCCTAGTCCGGATATTCCAGATGTAGCATCGGCGGTTAGAAATATTGCTATCATAGGACAAGTATTTTActcttaa
- Protein Sequence
- MTNRDNYLCRVCLSSSNDNQPIFSIEENSSKDKSVHDLSEKLWLCGGIEVAEDDGLPEHICIKCILKVNAAHELREQCQRADVKLRQLYGKAIEKADTVKDQYCQTEEEHFPLLTKEEDNYSFVRYQDSLSDEKSNVRILKESDGNIKTGNEILSDIDNKLERSTHEVPVVKREAYRTRRLTMFKRVTSMENLRNHKERQRQYIKKNGNTKYDSGEKDVLLNAENACNKVVRVSATRSNLNLKCTQCNRCYSSKKSLERHILTHNEAKFQCQKCNKQFVHIDELLQHGKLHRSNEKSKLVPCKICNKSFRKTDTMVRHLNVHKRVNPKEVFSILKEIRDRRKLENNVQSLEMNDRSILSLEDQNLDDRKALGNNALDDGIQKSTKQQVSDTEEKINHFYASSSESNSDNKSDSFDGIPVYRCKHCIKSYTKETSLKRHLLKHDERKFVCNVCNMKFFRQDRLKSHRDRYGHDEDKDCSIPQKPPDDKLAIKLINSWIREELDSDNEGKGFPCEICGKSYDTKKSLLKHQTNTHEVQEENCFNCGKECSCSIKCKGNRKNNEKEKNFTCLECNKSFEKEIKLQRHMRIHERTKEQKDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQTTTPTQNTQSYAQPQGNVCANTPVIPPIISTLPQSHINNINSTLGSQTNKTYIDSVQRMNAHAAAAAAAAAVVGTSSLHVHPSPDIPDVASAVRNIAIIGQVFYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01233161;
- 90% Identity
- iTF_01232551;
- 80% Identity
- -