Pdor001053.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- -
- Assembly
- GCA_010416905.1
- Location
- QUOG01000003.1:8872852-8875552[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.4e-06 0.00059 19.9 4.4 2 23 243 264 242 264 0.97 2 12 0.00044 0.03 14.5 2.0 1 23 269 291 269 291 0.97 3 12 2.4e-05 0.0017 18.4 0.6 2 23 301 322 300 322 0.97 4 12 0.001 0.072 13.3 4.9 1 23 419 441 419 441 0.98 5 12 0.0015 0.11 12.8 1.7 1 22 446 467 446 470 0.90 6 12 3.9e-06 0.00027 20.9 0.9 1 23 509 532 509 532 0.95 7 12 2.4e-06 0.00017 21.6 1.3 1 23 565 587 565 587 0.98 8 12 0.00015 0.01 15.9 4.0 1 23 601 623 601 623 0.96 9 12 0.00014 0.0097 16.0 4.7 1 23 629 651 629 651 0.98 10 12 0.0012 0.086 13.0 3.2 1 23 657 679 657 679 0.98 11 12 4.2e-05 0.003 17.7 6.5 1 23 685 707 685 707 0.98 12 12 0.00019 0.014 15.6 0.3 1 21 713 733 713 734 0.93
Sequence Information
- Coding Sequence
- atgacaaaccgagataattatttatgccGTGTTTGTCTATCGTCGAGCAACGACAATCAACCTATCTTTTCCATCGAGGAAAATTCTACGAAAGATAAGAGCGTCCACGATTTGTCCGAAAAGTTATGGCTATGCGGAGGTATCGAGGTTGCCGAAGACGACGGATTACCCGaacatatttgtataaaatgcATTCTCAAAGTCAATGCAGCTCACGAACTCAGAGAACAGTGTCAACGAGCGGATGTCAAATTGAGACAGCTATATGGAAAAGCGATCGAGAAAGCTGACACTGTCAAagATCAATATTGTCAAACCGAAGAAGAACACTTTTCACTTCTAACGAAAGAAGAGgataattattctttcgtaCGCTACCAAGATTCTCTTTCGGACGAAAAAAGTAACGTCCGAATCTTGAAAGAATCCGATGGTAATGTTAAGACTGGCAATGAAATATTGTCagatattgataataaattagaacGATCGACGCACGAGGTACCTGTTGTTAAAAGAGAAGCTTATCGTACGAGAAGACTGACGATGTTCAAAAGAGTTACCTCCATGGAAAATTTGAGAAATCACAAAGAAAGACAAAGgcagtatataaaaaaaaatgggaaTACAAAATACGACAGTGGCGAAAAGGATGTGCTTTTAAATGCGGAAAATGCGTGTAACAAGGTAGTCAGAGTTTCCGCTACGCGTTCCAATTTAAATCTCAAATGTACTCAATGCAACAGATGTTATTCCAGTAAAAAATCCTTAGAGAGGCATATTTTAACTCATAGCGAAGCAAAATTTCAATGCCAAAAGTGTAACAAACAATTCGTTCATATCGATGAACTACTCCAACACGGTAAACTTCACAGatctaatgaaaaatcaaagttAGTACCgtgtaaaatatgtaataaaagttTTAGGAAAACTGATACTATGGTACGACATTTGAATGTTCACAAAAGGGTCAATCCCAAGGAAGTATTTTCCATACTCAAGGAAATTAGAGATAGAAGGAAATTGGAGAACAACGTGcaatatttagaaatgaataatcgaTCTATCCTCTCTCTGGAAGATCAAAATTTAGATGATCGAAAGGCATTGGGTAATAACGGTCTCGACGATGGGATCCAAAAATTAACCAAACAAGTATCGGACAcggaggaaaaaataaatcatttctatgCGTCCAGTTCCGAGTCTAATAGCGATAATAAATCTGAATCTTTCGATGGTATACCAGTTTATCGTTGCAAGCATTGCATCAAATCTTATACAAAGGAGACATCTCTTCAGCGTCATTTGTTAAAACAcgacgaaagaaaatttgtttgcaACGTTTGCAACATGAAATTCTTCCGTCAAGATAGACTTAAAAGCCATAGAGACAGATACGGTCACGACGAGGATAAAGATTGTTCTATACCTCAAAAACCGCCGGACGACAAGTTggctattaaattaattaatagttgGATTAGAGAAGAATTGGATTCGGATAACGAAGGTAAGGGATTCCCCTGTGAAATTTGTGGTAAATCCTACGATACGAAAAAATCCTTATTGAAACATCAGACGAATACTCACGAAGtacaagaagaaaattgtttcaatTGCGGTAAGGAATGTAGTTGCTCCATCAAGTGCAAAGGgaatcgaaaaaataatgaaaaagagaaaaactttACGTGCTTAGAATGTAATAaaagttttgaaaaagaaatcaaattacAAAGACATATGCGAATACACGAACGTACGAAAGAGCAAAAAGATTCgaatttcaaacgatttttGTGTCATATTTGCAGTAAAACTTTTAGACAAAATACAGGTCTTATGTTTCACATGAGAACGCATACTGGATATAAACCTCATGTTTGCAAATATTGCGGACGAGGATTTACGTCCAATTCAAATTGCATTAATCACGAAAGAACGCATACCGGCGATAGGCCATTCGTTTGTCACTTTTGTAGCGCCGCTTTTGCTAAATCTTGCACTCTCAAAGCGCATATTACTACGCATACCGGCGAAGCTAATTATCACTGCAAAACTTGCGGCAAGTCTTTCagacgattaaaatatttgaaagagcATAGATTCACCCATACAGGAGAGAAACCGTATGCCTGCAAAATATGTGGTACAGCTTATAGTCATTCCGGCAGCTTATTCGTtcacgaaaaaaaatgtaaagcccagtacaataattatcaaaCTACGACGCCAACTCAAAATACGCAAAGTTACGCTCAACCTCAAGGAAACGTTTGCGCCAACACACCCGTTATACCTCCTATTATTTCAACACTGCCGCAAtctcatataaataatattaatagtactTTAGGTTCTCAAACGAATAAAACTTATATCGACAGCGTGCAAAGAATGAACGCGcacgctgctgctgctgccgctgCCGCGGCTGTGGTAGGTACGTCTTCGTTGCACGTACATCCTAGTCCGGATATTCCAGATGTAGCATCGGCGGTTAGAAATATTGCTATCATAGGACaagtattttattcttaa
- Protein Sequence
- MTNRDNYLCRVCLSSSNDNQPIFSIEENSTKDKSVHDLSEKLWLCGGIEVAEDDGLPEHICIKCILKVNAAHELREQCQRADVKLRQLYGKAIEKADTVKDQYCQTEEEHFSLLTKEEDNYSFVRYQDSLSDEKSNVRILKESDGNVKTGNEILSDIDNKLERSTHEVPVVKREAYRTRRLTMFKRVTSMENLRNHKERQRQYIKKNGNTKYDSGEKDVLLNAENACNKVVRVSATRSNLNLKCTQCNRCYSSKKSLERHILTHSEAKFQCQKCNKQFVHIDELLQHGKLHRSNEKSKLVPCKICNKSFRKTDTMVRHLNVHKRVNPKEVFSILKEIRDRRKLENNVQYLEMNNRSILSLEDQNLDDRKALGNNGLDDGIQKLTKQVSDTEEKINHFYASSSESNSDNKSESFDGIPVYRCKHCIKSYTKETSLQRHLLKHDERKFVCNVCNMKFFRQDRLKSHRDRYGHDEDKDCSIPQKPPDDKLAIKLINSWIREELDSDNEGKGFPCEICGKSYDTKKSLLKHQTNTHEVQEENCFNCGKECSCSIKCKGNRKNNEKEKNFTCLECNKSFEKEIKLQRHMRIHERTKEQKDSNFKRFLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQYNNYQTTTPTQNTQSYAQPQGNVCANTPVIPPIISTLPQSHINNINSTLGSQTNKTYIDSVQRMNAHAAAAAAAAAVVGTSSLHVHPSPDIPDVASAVRNIAIIGQVFYS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01233161;
- 90% Identity
- iTF_01232551;
- 80% Identity
- -