Basic Information

Gene Symbol
-
Assembly
GCA_001465965.1
Location
NW:849409-865030[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 1.3e-05 0.00078 18.9 1.0 1 23 261 283 261 283 0.98
2 32 0.0021 0.13 11.9 1.9 1 23 306 329 306 329 0.96
3 32 0.00072 0.043 13.4 0.4 2 23 336 358 335 358 0.96
4 32 0.0018 0.11 12.1 0.4 1 19 378 396 378 399 0.94
5 32 0.0011 0.066 12.8 3.0 2 23 490 511 489 511 0.96
6 32 0.0033 0.2 11.3 0.4 1 23 517 540 517 540 0.93
7 32 0.0015 0.087 12.4 0.2 1 23 613 636 613 636 0.93
8 32 0.0011 0.064 12.9 1.4 1 23 642 665 642 665 0.97
9 32 0.095 5.7 6.7 1.5 1 23 678 700 678 700 0.97
10 32 1.5e-05 0.00089 18.7 2.1 3 23 745 766 744 766 0.97
11 32 3.4 2.1e+02 1.8 0.6 1 23 797 820 797 820 0.91
12 32 0.014 0.84 9.4 0.5 2 23 827 850 826 850 0.93
13 32 1.2 73 3.3 0.1 2 23 859 881 859 881 0.87
14 32 0.042 2.5 7.9 3.0 1 23 887 910 887 910 0.96
15 32 9.4e-05 0.0056 16.2 0.5 1 23 918 940 918 940 0.97
16 32 0.24 14 5.5 0.4 2 23 973 996 972 996 0.92
17 32 0.0004 0.024 14.2 1.5 1 23 999 1022 999 1022 0.97
18 32 0.0011 0.063 12.9 0.3 2 23 1029 1051 1028 1051 0.95
19 32 0.00014 0.0081 15.7 2.6 1 21 1078 1098 1078 1099 0.95
20 32 0.0025 0.15 11.7 2.0 2 23 1113 1134 1112 1135 0.93
21 32 0.64 39 4.1 0.8 1 23 1138 1161 1138 1161 0.94
22 32 0.027 1.6 8.5 1.0 5 23 1171 1189 1167 1189 0.91
23 32 0.53 31 4.4 0.1 2 23 1197 1219 1197 1219 0.94
24 32 2.3 1.4e+02 2.4 0.1 2 23 1226 1248 1225 1248 0.88
25 32 0.24 14 5.5 4.3 2 23 1257 1279 1257 1279 0.95
26 32 0.75 45 3.9 0.3 2 23 1285 1307 1284 1307 0.94
27 32 0.24 15 5.5 0.2 1 23 1360 1383 1360 1383 0.92
28 32 0.077 4.6 7.0 7.4 1 23 1408 1431 1408 1431 0.80
29 32 0.11 6.3 6.6 1.2 2 23 1524 1546 1523 1546 0.94
30 32 4.4 2.6e+02 1.5 0.6 2 23 1553 1575 1552 1575 0.93
31 32 0.65 39 4.1 3.3 1 23 1586 1608 1586 1608 0.97
32 32 0.23 14 5.5 0.2 3 21 1617 1635 1615 1636 0.94

Sequence Information

Coding Sequence
atgtttgcaacgacgacgacgacgacgacgacgacgacgacgacaacaacgaagacgaagacgaaaacggcgaagaagaagacgaagacgacggcGATGACGACAACGTCGACGAAGACAAGGATGACAACGATAAAGATGGAGTCTAGACAAAGTTATCATGGACTGTGCCGATTGTGTGCATCTCACGACGCTGTTATGATGGATATTTTCGGTCAGGAGGGCAGAAATCGACAATTCATCGAGAAAATTCAAGCTTGTTTGCCATTCACGattaCAGAAAATGATAATCTCCCAAAGACCGTATGCAGACGTTGCATTTTCAACCTGGAGAATTTTTATGACTTTAGGACAGCATGCGTCAATGCTGTGGCAATATTAGAAAGACATTTACCTCCAAGCGAAACATTTgacaaagatttaaataactaTACGCAGTGCAGTAATGCACAAttcctaaaagaaaaaaagaacataccaataataataccaGAAGCACCAATAGTTAATCCGAATGCAGCTCTAGGTACACCGCCAAGATTAAATTGCATTAGTGAAGCGGATCACGAAATAGAAGAATATCTTGAAAATGGTGTCCCAGATGAAgAGGAAGCGTTTGATGTAGATGAATTTGAATTGGATATGGAAACTAATCCTAGCGATTTCTTAGAAATGCCTCCTATGATAACTGAAGATAACGAAGAAACTAATTCCAAAAATATCCCTGCTGCAATGCAAAATTCTACAGTATTTCAACATACGTTGGAGCAACATGAAGTGTATGTTTGTTCGTTGTGTACCAAAGCATTTAGTTCCAAAGGACACTTGTCCCTTCATGCGAGAATTCATACAGGCGCGGGCAACGTTATTGGTCAGAAGGTTATCACCGATGATCATACTTCTTATAAAAGGCCTTACCAATGTGATCTCTGTAACAAATCTTATTCAACGGCCAAACATCGATGGGGACATGTATCTACAACGCAtaaAGGACATCCTGCTGTTACATGTGGGTATTGTTCACGTATTTATTCAACTAGAATGAACTTGGAAGAACATGTTAAATCTCGACACGAAGGAGCATCGAAATCAACCAAATTATTAAATCCTCTTTATCGTTCaaaatcgaaatattattgtaaaacatgttcaaaaatgtttacaaGTATAGCTGAGTTAAATAGTCATAGTCAACTTTGTGCGAAACATTCAACTGAAGTACAATCTGATATTCCAAGCGGAAGAACAAATATGAAAGAACTGGAGATTGATACTTCGGATGTATCGAGTTGGGATACAGATGATGAAAATAAGGGATTTAAAAATGCGGAAGAAAAATTAGCGAAAAATCCACAACTTACGATATTAAAACAAGCGTTGATTAAAGGGATGAAAAGAAGTGCTCCAGATGGAGAAATTACTCCATCTAAGATAATGAAAATGGAGGATGGTGAAATTCAGAAGTGGTACTGTGATATGTGCTCTAAATGTTTTACATCTGTAgaagattttaaaaaacacGAGACTACGCATGAAGCCGATAAAccttttatatgtttattctGTAGTGAAGAATTTGTTTCAAAATCATTGTTCAGGAATCATATTTTGGCAATGCATGGGGTTGATCCAGATCTTCttatagataataatgtatgtttaaaacaaattgttctTATGAAACCATGGAGTAATCAGAGGCCGATACCTGTATCTGATCAAAAAGACACGATGGAAACTTCGGAGTTAGTTTCGCCTTCAGAAataaatatagaaaacgaAGATGAAAATCCAAATAGAAATATCCCTGAAAATTCGCTGGATATAGAGACTGTTTTTCTATGTGAATTATGTTCACGGGATTTTAATGATAGAGCATCATTGTGGTTACATATCCGTGCGACGCACAAAGAATTTGCTGCTTTTGCTTGTGGAATCTGTTTGAAAATATGTTCCGACAATAAGCAACTTACAAATCATGTTAATACATTTCATGGAGGATCAAAATTGCTTGTATCTGAGCAAAGAAggtaTAGCTGCACAATATGTGGAAGACAACATGATTCACGAAAAAAGTTAATTACCCATGTCTCgattcataatattaattctaaatgTGATCCCGCAAATTATGTAcaattaaatagtaattattataacgaaaCGTTAAATAGTAATGaagcaaatgaaaatattttggaaTACGATGGAGATGAGGGAGAAAAAGTAGACTGccatatatgttataaatcaTTTCCAAATGAAGACCATCTTATAAGACACTTGAGGAATGCTCATaagaacgaGCAAATGAGTGAGGACATTGGTAATGGGAATTCAGGAAATATGAATGGTACCGGTAATAATAAGGCACaatgtcatttattttatgtctGTGAGCTTTGTGGTAACTCACATCGTAGTAAATGGGAACGTTGGTTACATGTCAATAAGGAGCATAGCGATGAACCATCTATCAGGTGCGAGGAGGAAGGTTGCGGAAAAATATTTGCTACCAAAACATTACGCAATGATCACATAAGTCATCATAATATGCAAGGCATTTTTCCAAATACCTGTGAAATTTGTGGAAAATTATGGAACTCTCGAGTAGATTATTGGAAGCATGCGATGGGAGTTCATCATGCAACAGTACCGTTTATATGTGGTATTTgtctgaaaatatttaaaaattgttgtgTTCTTCAAACGCATGTGAGAAATGTGCATTGGCCATTGACAAATGCTGATTTTAGTTGTGATATATGTGGAAGACCTTACGCCAACAAATCtaaaatgttaaaacataGAACTAttcatagaaagaaatatgatatatataacaaCAGTATTAATTCTAACTTGAACGAATCGTTAGAATATGGGCATAGTGCACCACCGGAAACGACGGATTTAGTATGTGAAACTTgtgaagaaatgaaatttccaGATTTGGAAAGTTTATGCAATCACAGACGTATTGTGCATCGTCTATTTCCGTGCGATCTTTGTAACAAATATTACGGCAGAACGTCTCATTTATGGAAACATGTAAATAGAGTACATAAAGGTCACGTAGATATAACGTGTCCTTATTGTTTCAAAACGAGTGCGTCTAAAGACCATTTAGCAGGACATATCGCTAAAATTCATAGGTATGAGGTAGAAGTTACAAAGGATAATAAGAATTCAGTAAATTTCAAATCTTCTAATGGAGAAGAAGTGGGTTTACATTATTGTGAGAAATGTAATAAGggattttataaaagatatttacttAGACGTCATATGAAAGCTTGTCAGAACTATCGGAAGGATCCAGGAGCATTATTGACTCGTTGTCGCGCTTGTGAAAGAATATTCAAAGATCGTGCGAGTCTACGAAAGCATATTGAAAATCATCATAGCGATTATACTTGTCATTTATGTGAGGTAACTGTTACTTCGAAATTGGGAATTATGACTCATAATCGTATCAATCATATGAACCATCCAGATTTGACTTGCATTAGTTGTAATAAACTATTCCGAACTAAAGAAGATTTAGAGTctcataaaaaagaacatagaTTTCACGTGAGCCTAAATGTTTGTGATTACTGTGGAGATACAGTAGAGAATaaacttaaattaaaaatgcacGTACTATCATTACATCGAAATGAAATAGGAGTCTCTTGTGGAGTCTGTTTGATACCTATGAAAGATCCTAAAGATTTGAAGAAACATGtcgaagaaaaacataaaaatgttttatccaAGCCAAATACATGCCACGTATGTGGAAAACAATATGCATCCAAATGGAAAGCTTTTGatcatacaaataaatgtCATGGAAAGGTATTTACACCATGTAAACATTGCTTAGCCGTTTTTATAACCGATGAAGATATCAAAGATCACTATGAACGCgttcataatatttctaaaaatcatGTAGCTTTATTAGAAGGCCGTATGGATGTGCCAGtggatattattgttaaagaaGAACCAGATGATATCGATTTTGACGATGATTTGTGCgagaatgatttaaataattctaaaggaaaaagatCATTAAATGATACCTTTGATTGCGAGATGTGTCCAGAAATGTTCCTTAAATATGAAACATTAGCGAAACATTATGAAAATGTTCACAATACTAATCCAATGGATAtggttagaaagaaaaataatgatggtAAACGAAAAGTGAGAAGTCGAAAGAATTTCGAATGcgtatattgtaaaaaacacTTTTCTTCTCACAATTTATTTTGGCatcataataatgtatatcATAGTGAATTTAACATGCAAAATATTGCATCTACGTCTATTTTAGAaactcatttaaaaaataataatcagataaagaaggaagaagctTCGTCGTTTATGAACGAAACAAATTTGAACATTCCAGAATTTAGTTTATTTgaagatataaatttacaattatcagCGCAGAAACCTGTACCAAAACTTATGCCATTGTCGCATGTGAAACCACCCGGAACTAAATGTTCGAGAAAAGATTCTCGGAAAGTGTATGATGAATCAACAAATACCGAATGTACTTGTGAAGTTTGCGGAAAACCATGGCCCGCTAAGAAACATCTTTGGCAACATCTTATTCGTTTCCATAAGCCACAAGCGGCAGTAACCTGTGgtgtttgtttaaaattatgcCAATCTTATGAAGACTTATCCGACCATTTAAAGGCTACGCATGAAGCGATATTAACTTGCGAAGGAAATAATTTCACATGTAAAACTTGTGGCAGATATCACAATGCTAGAAGTAAACTATTTTTACATATGAGCGttcatattaataaagttGAAAAATTCTGGTGTCAAAAATGCCAAGAAGGTTTTGAAAATGAGAGTAAATTTTCCGAGCATCTACTAATATGTCAGAAGAACATTGAATCGACGAGAAGTAATTctgaagataatataaaaaatgataacgaagaaaaaggtAGCTTGATAGGTGATGAGACTTCGGCCGTCGAAGAAGTAgatgaagtagaagaagtggatgaaatagaagaagtagaagaagtggATGAAGTAGAAGACGTGGAAGACGTagaagaagttgaagaagtggatgaagtagaagaagaggatgaagtagaagaagtgGATGAAGCAGAAGAAGTGGATGAAGCAGAAGAAGTGGATGAAGCAGAAGAAATGGATGAAGCAGAAGAAATGGATGAAgtagaagaatattttgatttcttaTCGGAAGAAGATGGTGCTACTCAGGAATACACTAATAGTGAAAATTCAGAGCATTCTAGAAGTTTGGACAGTGGCAGTAATAATAGTACGAGCAATGGAGAGGAAgcggaaagagaaaatgattttgaagCTAGATCTAAATCTAATGACAGAACTGTAAATACTGAAAATGAGGATACCAATTTGGAAAATGCAGGGacgattaaaaatcaaaatttaaatgatatgaaTCGTTTCATGATACACAAcgaagatatgaaaaaaaataaagatgaagaagaaagtttaaaaatcaaattgaggAGTCCTGAAACTATAAGAAAATGccaggaaataaataaaaatgaagaacaaaatttgaatttaagtGAATCCTTAAACGGCGCTAATTTGAGCAATTTTCAtgtaaagaaggaaggaaaaagaagtcAAATAGATTTTTCAGATGAAGATGACGGTCCACCTGTTTTGAGTCCAATAATGCCTTTATTAGAACAGGAATCTGTACAGCgtaataatctaataagtGACATGAGACACAAGGTTAATCCAATGGTAACAATGAATAACGTTAAAACATTGGAAATATGCGAATCACCTGAAAATTGTAACGATGTTGAAAGAAATACTATGTCATCGATGGCCAAtcctataaattattatgaagaTCCTGTTAACGAAAAGATGAATATTGGTATTGAATATAGATGCgaagattttgaaaatatggATAACGACGAAGATAACGATGAAGATAATAGTATGTCGACCAATGAGGATGGACAAATGGAAATAGATGAGCAAATGGATGTAGATGAACAAAACATAGattgtaataatgaaaatgaatacgaAAAATTGGATATTATCAATGATTCTGAGATGGATActtatgaagaaaatatagacGAAGAGATGAAGTATGACGAAACTAGAGATACTAACGTACAAATTCATGATCTAAATGGAGCTGTTTTAATGGTAACTAATGATTCCGAtggtaatcaaattttaattcaaccAAGCGTATTAACTATAGGAAACGAGGATTGCAACGCAGGTGCAACAGCGTTTATTTATGAAGAAACGAATGAGTACGAAATGGAAGATTACGGGATAGTACAGCAGGAAGGAAATTCTGACGATATTCATAATATGTCGTTCACTCAAGAAGAATCTGACAATGACGAGGAGGATAGCATGGAAGGTATCGAAATAACTGATACAAAAGAACATTGTATGAGTGCCAAAAGCGAACAATTTAACGTATAA
Protein Sequence
MFATTTTTTTTTTTTTTKTKTKTAKKKTKTTAMTTTSTKTRMTTIKMESRQSYHGLCRLCASHDAVMMDIFGQEGRNRQFIEKIQACLPFTITENDNLPKTVCRRCIFNLENFYDFRTACVNAVAILERHLPPSETFDKDLNNYTQCSNAQFLKEKKNIPIIIPEAPIVNPNAALGTPPRLNCISEADHEIEEYLENGVPDEEEAFDVDEFELDMETNPSDFLEMPPMITEDNEETNSKNIPAAMQNSTVFQHTLEQHEVYVCSLCTKAFSSKGHLSLHARIHTGAGNVIGQKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHKGHPAVTCGYCSRIYSTRMNLEEHVKSRHEGASKSTKLLNPLYRSKSKYYCKTCSKMFTSIAELNSHSQLCAKHSTEVQSDIPSGRTNMKELEIDTSDVSSWDTDDENKGFKNAEEKLAKNPQLTILKQALIKGMKRSAPDGEITPSKIMKMEDGEIQKWYCDMCSKCFTSVEDFKKHETTHEADKPFICLFCSEEFVSKSLFRNHILAMHGVDPDLLIDNNVCLKQIVLMKPWSNQRPIPVSDQKDTMETSELVSPSEINIENEDENPNRNIPENSLDIETVFLCELCSRDFNDRASLWLHIRATHKEFAAFACGICLKICSDNKQLTNHVNTFHGGSKLLVSEQRRYSCTICGRQHDSRKKLITHVSIHNINSKCDPANYVQLNSNYYNETLNSNEANENILEYDGDEGEKVDCHICYKSFPNEDHLIRHLRNAHKNEQMSEDIGNGNSGNMNGTGNNKAQCHLFYVCELCGNSHRSKWERWLHVNKEHSDEPSIRCEEEGCGKIFATKTLRNDHISHHNMQGIFPNTCEICGKLWNSRVDYWKHAMGVHHATVPFICGICLKIFKNCCVLQTHVRNVHWPLTNADFSCDICGRPYANKSKMLKHRTIHRKKYDIYNNSINSNLNESLEYGHSAPPETTDLVCETCEEMKFPDLESLCNHRRIVHRLFPCDLCNKYYGRTSHLWKHVNRVHKGHVDITCPYCFKTSASKDHLAGHIAKIHRYEVEVTKDNKNSVNFKSSNGEEVGLHYCEKCNKGFYKRYLLRRHMKACQNYRKDPGALLTRCRACERIFKDRASLRKHIENHHSDYTCHLCEVTVTSKLGIMTHNRINHMNHPDLTCISCNKLFRTKEDLESHKKEHRFHVSLNVCDYCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEEKHKNVLSKPNTCHVCGKQYASKWKAFDHTNKCHGKVFTPCKHCLAVFITDEDIKDHYERVHNISKNHVALLEGRMDVPVDIIVKEEPDDIDFDDDLCENDLNNSKGKRSLNDTFDCEMCPEMFLKYETLAKHYENVHNTNPMDMVRKKNNDGKRKVRSRKNFECVYCKKHFSSHNLFWHHNNVYHSEFNMQNIASTSILETHLKNNNQIKKEEASSFMNETNLNIPEFSLFEDINLQLSAQKPVPKLMPLSHVKPPGTKCSRKDSRKVYDESTNTECTCEVCGKPWPAKKHLWQHLIRFHKPQAAVTCGVCLKLCQSYEDLSDHLKATHEAILTCEGNNFTCKTCGRYHNARSKLFLHMSVHINKVEKFWCQKCQEGFENESKFSEHLLICQKNIESTRSNSEDNIKNDNEEKGSLIGDETSAVEEVDEVEEVDEIEEVEEVDEVEDVEDVEEVEEVDEVEEEDEVEEVDEAEEVDEAEEVDEAEEMDEAEEMDEVEEYFDFLSEEDGATQEYTNSENSEHSRSLDSGSNNSTSNGEEAERENDFEARSKSNDRTVNTENEDTNLENAGTIKNQNLNDMNRFMIHNEDMKKNKDEEESLKIKLRSPETIRKCQEINKNEEQNLNLSESLNGANLSNFHVKKEGKRSQIDFSDEDDGPPVLSPIMPLLEQESVQRNNLISDMRHKVNPMVTMNNVKTLEICESPENCNDVERNTMSSMANPINYYEDPVNEKMNIGIEYRCEDFENMDNDEDNDEDNSMSTNEDGQMEIDEQMDVDEQNIDCNNENEYEKLDIINDSEMDTYEENIDEEMKYDETRDTNVQIHDLNGAVLMVTNDSDGNQILIQPSVLTIGNEDCNAGATAFIYEETNEYEMEDYGIVQQEGNSDDIHNMSFTQEESDNDEEDSMEGIEITDTKEHCMSAKSEQFNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
-
80% Identity
-