Pdor002147.1
Basic Information
- Insect
- Polistes dorsalis
- Gene Symbol
- Prdm2
- Assembly
- GCA_010416905.1
- Location
- QUOG01000001.1:6280031-6288494[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 31 1.6e-05 0.0011 19.0 1.0 1 23 199 221 199 221 0.98 2 31 0.0027 0.19 12.0 1.9 1 23 244 267 244 267 0.96 3 31 0.0024 0.17 12.1 0.4 2 23 274 296 273 296 0.96 4 31 0.0023 0.16 12.2 0.2 1 19 316 334 316 337 0.94 5 31 0.00049 0.034 14.3 0.7 2 23 430 451 429 451 0.96 6 31 0.34 24 5.4 0.1 2 23 458 480 457 480 0.90 7 31 0.00036 0.025 14.7 0.1 1 23 553 576 553 576 0.96 8 31 0.016 1.1 9.5 0.7 1 23 582 605 582 605 0.96 9 31 0.061 4.3 7.7 0.8 1 23 618 640 618 640 0.97 10 31 0.0093 0.65 10.3 2.6 3 23 685 706 683 706 0.95 11 31 8.4 5.9e+02 1.0 0.4 1 23 736 759 736 759 0.84 12 31 0.016 1.1 9.6 0.7 2 23 766 789 765 789 0.94 13 31 0.61 43 4.6 0.2 2 23 798 820 798 821 0.91 14 31 0.027 1.9 8.8 0.1 2 23 827 849 826 849 0.96 15 31 4.1e-05 0.0029 17.7 0.5 1 23 857 879 857 879 0.98 16 31 0.48 34 4.9 0.3 3 23 913 935 911 935 0.89 17 31 0.0005 0.035 14.3 1.5 1 23 938 961 938 961 0.97 18 31 0.0032 0.23 11.7 0.2 2 23 968 990 967 990 0.95 19 31 0.00017 0.012 15.8 2.6 1 21 1017 1037 1017 1038 0.95 20 31 0.0031 0.22 11.8 2.0 2 23 1052 1073 1051 1074 0.93 21 31 0.08 5.6 7.3 0.9 1 23 1077 1100 1077 1100 0.95 22 31 0.001 0.07 13.3 2.2 2 23 1107 1128 1106 1128 0.95 23 31 0.66 46 4.5 0.1 2 23 1136 1158 1136 1158 0.94 24 31 3.6 2.5e+02 2.1 0.0 2 23 1165 1187 1164 1187 0.87 25 31 0.3 21 5.6 4.3 2 23 1196 1218 1196 1218 0.95 26 31 0.79 56 4.2 0.8 2 23 1224 1246 1223 1246 0.91 27 31 0.36 25 5.3 0.1 1 23 1299 1322 1299 1322 0.93 28 31 0.073 5.1 7.5 2.7 1 21 1347 1367 1347 1372 0.91 29 31 0.13 9.2 6.7 1.2 2 23 1465 1487 1464 1487 0.94 30 31 0.64 45 4.5 2.5 1 23 1527 1549 1527 1549 0.97 31 31 0.032 2.2 8.6 0.5 3 21 1558 1576 1556 1577 0.94
Sequence Information
- Coding Sequence
- ATGGATATTTTCGGTCAGGAGGGCAAAACCCGACAATTCGTCGAGAAAATTCAAGCTTGTTTGCCATTCGAGatCAGAGAAAATGATAATCTTCCAAAGAACGTATGCAGTCGTTGTATTTACAATCTGGAGAATTTTTATGACTTTAGGACAGCATGCGTCAATGCTGTGGCAttgttaaaaagatatttaccTCCAAGCGAAGCACTTGACAGAGATATAAATAACTATACGCAGTGCAGTAATGTacaatttcaaaaagaaaaagaaaatataccaATAATAATACCAGAAGCTCCCATAGTAAATCCCAATGCAGCTCTGGGTACACCGCCAAGATTAAATTACAGCAGTGAAGCGGATCATGAAATAGAAGAATATCTTGAAAATGGTGCCATGGATGAAGagGCAACGTTTGATTCAGATGATAGAAAATCAGATGAATTTGAATTGGATATGGAAACTAATCCTAGTGATTTCTTAGAAATGCCCCCAATGGTAACTGAAGATAGCGAAGAAACGAGTTCCAAAAATATCCCTACAGCAATGCAAAATTCTACAGTATTTCAACATACGTTGGAGCAACATgaagtgtatgtgtgttcgTTGTGTACCAAAGCATTTAGTTCCAAAGGACACTTGTCCCTTCATGCGAGAATTCATACAGGCGCAGGCAATGTTATTGGTCAGAAGGTTATCACCGATGATCATACTTCTTATAAAAGGCCTTACCAATGTGATCTCTGTAACAAATCTTATTCAACAGCGAAACACCGATGGGGACATGTATCTACAACGcacaaAGGACATCCTGCTGTTACATGTGGATATTGTTCACGCATTTATTCAACCAGATTGAATTTGGAAGAACATGTTAAATCTCGACATGCAGGAGTATTGAAATCAACCAAATTACTAAATCCTCTTTATCGCTCAAAAccgaaatattattgtaaaacgTGTTCAAAAATGTTCACAAGTATAGCTGACTTAAATATTCATAGTCAACTTTGTGTGAGACACTCAATTGAAGTACAATCTGATATTAGAAGCGAAATAACCAATATGAAAGAACTGGTGATTGATACTTCGGATGTATCGAGTTGGGATACAGATGATGAAAACaaaggatttaaaaatgcGGAAGCAAAATTAGCGAAAAATCCACAACTTACGATATTGAAACAAGCGTTGATTAAAGGAAGCAGGATGAAAAGAAGTGCTCCAGATGGAGAAATTACTCCACCTAAGATAATGAAAATGGAGGATGGTGAAATTCAGAAGTGGTACTGTAACATATGTTCTAAAGGTTTTACATCGGtagaagattttaaaaaacacgAGACTACGCATGAAACCGATAAAccttttatatgtatattgtgtAGAGAAGAATTTGCTTTAAAATCGTTGCTCAGTAATCATATTTTGGTATTGCATGGGGTTGATCCAAATCCTCttgtagataataatttatgtttaaaacaaattgtGCTTACGAAACCATGGGGTCAACAGATGCCGATACCTATATCCGATCAAAAAGATACGAAGGAACCTTCGGAGTTTGTTTCGTCTCCAGAAataaatatagaaaatgaagatgaaaatCCAGATAAAAGTGTCCCTGAAAATTCATTGGATATGGAGACCGTTTTTGTATGTGAATTATGTTCACGGGATTTTAATGATAGAGCATCGTTGTGGTTACATATCCGTGCGACGCACAAAGAATTTGCTGCTTTTGCTTGTGGAATCTGTTTGAAAATATGTTCCGACAATATACAGCTTCTAAACCACGTTAATAAGTTTCATGGAGGATCAAAATTGCTTCAATCTGAACAGAGAAGgtATAGCTGCACAATATGTGGAAGACAACACGATTCACGAAAAAAGTTAATCGCTCATGTATCGATACATAGTTTTAATTCTAAACGTGATCCCGCAACTTATGTACAgttaaatagtaattattgTAGCGAAACGTTAAATGGTAATGaagcaaatgaaaatattttggaGTATGATGGAGATGAGGGAGAAAAAATAGACTGCTATACGTGTTGCAAAACATTTCCAAATGAAGACCATCTTATAAGACACCTGAGGAATGCTCATaagAAAGAGCAAATAAACGACGTCATTGGTAATGGGAATTCAGGAAATATGAATGGTACTGGTAATAAGGCACaatgtcatttattttatgtctGTGAACTTTGTGGTAATTCGCATCGTAGTAAATGGGAACGTTGGTTACATGTCAGTAGTGAGCATAGCGATGAACCATCTATCAAGTGCGAACAGGAAGGCTGCGGAAAAATATTTGCTACCAAAACATTACGCAATGATCACATTAGTCATCATAATATGCAAGGCCCTTTGCCAAATACCTGTGAAATTTGTGGTAAATTATGGAACACTCGAGTCGATTATTGGAAGCACGTGATGGGAGTACATCATGCAACAGTGCCGCTTATATGCGGTGTTTGtctgaaaatatttccaaacgGTATGCTTCTTAGAACGCATGTGAGAACTCTGCATTGGCCATTGACAAATGCTGATTTTAGTTGCGATATATGTGGAAGACCTTACGCCAACAAAtctaaaatgttaaaacataGAAATATTCATAGAAAGAAAGTTGATGCATATAACAACAGTATTAATTCTAACTTGAACGAATCGTCAAATTATGGGCATAGCGTACCGTCGGAAACGACTGATTTAATATGTGAAATTTgcgttgaaatgaaatttccaAATTTGGAAAGTTTATGCAATCACAGACGTATTGTGCATGGTCTATTTCCGTGCGATCTTTGTAACAAATATTACGGTAGAACGTCTCATTTATGGAAACATGTAAATAGAGTACATAAAGGTCACGTAGATATAACGTGTCCTTACTGTTTGAAAACGAGTGCGTCTAAAGACCATTTAGCAGGACATATCGCTAAAATTCATAGGTATGAGTTAGAAGTTACAAAGGATAATAAGAATTCagtaaattttaaatcttctAACGGAGAAGAAGTGGCTTTACATTATtgtgaaaaatgtaataagggattttataaaagatatttacttAGACGTCATATGAAAGCTTGTCAGAACTATCGGAAAGATCCAGGAGCATTATTGACTCGTTGTCGCGCTTGTGAAAGAATATTCAAAGATCGTGCGAGTCTACGAAAGCATATTGAGAATCATCATAGCAATTATACTTGTCATTTATGTGATGAGACTGTTACTTCGAAATTGGGTATTATGACCCATAATCGTATCAATCACATGAACCATCCAGATTTGACTTGcactaattgtaaaaaattattccgaACTAAAGAAGATTTAGAGTCTCATAAAAAGGATCATAGATATCACATGAGTCCGAACGTTTGTGATTACTGTGGAGATACAGTAGAGAATAaacttaaattaaaaatgcacGTACTATCGTTACATCGAAATGAAATAGGAGTCTCTTGTGGAGTATGTTTGATACCTATGAAAGATCCTAAAGATTTGAAGAAACACGTCGAAGACGAACATGAAAGTGTTTTATCCATGCCAAATACATGCCACGTATGTGGAAAACAGTATGCTTCCAAATGGAAAGCTTTTGATCATACAAATAAATGTCATGGAAAGGTATTTATACCATGTAAACATTGTTTAGCTGTCTTTACAACCGATGAAGATATCAAAGATCATTATGAACACGttcataatatttctaaaaatcatGTAGCTCTATTAGAAGATCGTATGGATGTGCCAGTGGATATCATTGTTAAAGAAGAACCAGATGATATCGATTTTGACGAGGATTTGTGTgagaatgatttaaataattctaaaggAAGAAGATCATTAACCGATACCTTTGATTGCGAGATGTGCCCAGAAATATTCCTTAATTTTGAAACATTAGCGAAACATTATGAAAATGTTCACAATACAAATCCAATTCATATGgctacaaagaaaaataatgatagtaAACGAAAAGCGAGGAATCGAAAGAATTTCGAATGTATCTATTgcaaaaaacaattttctacttaCAGTTTATTCTGGAATCACGTTAATGTATGCGAAAGACATAGTGGATTTAACATGCAAAACATTGCATCTACGTCTATTTTAGAaactcatttaaaaaataataatcagataaagaaggaagaagctTCGTCGTTTATGAACGAAACGAATTTGAACATTccagattttaatttatttgaagataTAAATCTACAATTATCGGCGCAGAAACCTGTACCAAAACTTATGCCATTGTCGCATATGAAACCACCCGCAACTAAATGTTCGAGAAAAGATTCTCGGAAAGTATATGACGAATCAACGAATACCGAATGTACGTGTGAAGTTTGCGGTAAACCATGGCCCGCCAAGAAACATCTTTGGCAACATCTTATTCGTTTCCATAAACCACAAGCTGCAGTAACCTGTGgtgtttgtttaaaattatgtCAATCTTATCAAGACTTATCCGATCACTTAAAGGCTACGCATGCAGCGATATTATCTTGCGAAGGGAATAATTTCACGTGTAAAACTTGTGGCAGATATCACAATGCTagaagtaaattattattacatatgaGCGTTCATATTGATGACATTGGAACATTTTGGTGTCAGAAATGCCAAAGAAGTTTTGAAAGCGAGAGTAAATTTTCCGAGCATCTACAAAtatgtaagaagaaaatcgaaTCGACGAGAAGTAATTCGGAAGATAATATgaagaatgagaatgagaatgaagagaaaggTAGTTTGATAGGTGATGAGACTTCGGTTGTCGAAGAAGTGgatgaagtagaagaagtagatgaagtagaagaagtgGATGAAGTAgatgaagtagaagaagtagatgaagtagaagaagtggaagaagTGGATGAAGTGGATGAAGTAGAAGAATTGGATGAAGtagaagaatattttgattCCTTATCGGAAGAAGATGGTGCTACTCAGGAATACACTAATAGTGAAAATTCAGAGCATTCTGGGAGTTTGGACAGTGGCAGTAATAATAGTACGAGCAATGGGGAGGAAGCGGAAggagaaaatgattttgaagCTAGGTCTAAATCTAATAACAGAACTATTACTACCGAAAGTGACGATACTAATTCGGAAAATGTAGGGGCGATTAAAAgtcaaaatttaaatgatatgaaTCGTTTCATGATACACAACgaagataaggaaaaaaataaggacGAGAAAGATAATtcgaaaatcaaattattgagTCCTGAAACAATAAGAGATTGCAATGAAATAAGcaaacaagaagaacaagattTGAATTTAACTGAATCCTTGAACGGCGCTAAATTGAGCAATTTTCACGtaaagaaggaaggaggaagaaaccAAATGGATTTTACGGATGAAGAAGATGACGGTCCACCTGTTTTGAGTCCAATAATGCCTTTATTAGAACAGGAATCGGTACAGCGTAATAATCCAATAGATGACGCGAGACATAAGCTTAGTCCAATGGTAACAATGAATGACGTTAAAACATTGGAAATGTGCGAATTACCTGAAAATTGTAACGATGTTGAAAGAAATACTATGTCATCGATGGCCAatcctattaattattatgaaaatccTGATAACAATAagatgaatattaatattgaatatggATGCGAGGATTTTGAAAATATGGATaatgacgaagaagaagaagaagaagaagataatagtATGTCAACCAATGAGGATGGACAAATGGAAATAGATGAGCAAATGGATATAGACGAACAAAATGTAGATTGTAATAATGAGAATGGATACGAAAAACTGGACATTAGTATCAATGATTCCGAGATGGATTCTTATGAAGATAATTTAGACGAGGAAATGAAATATGACGAGACTAGGGATACTAACGTACAAATTCATGATTTGAATGGAGCTGTTTTAATGGTAACTAATGATTCCGAgggtaatcaaattttaattcaacCAAGCGTATTAACTATAAGAAATGAGGATTGTAACGCAGGTACAACAGCATTCATTTATGAAGAAGCGAATGAGTACGAAATGGAAGATTACGGGATAGTACAGCAGGAAGGAAGTTCTGACGACATTCACAATATGTCGTTCATTCAAGAAGAATCTGATAATGAGGAGGATAGCATGGAAGGTATCGAAATAACTGATACGAAAGAACATAATATTAGTGCCAAAAGCGAACAATTTAACGTATAA
- Protein Sequence
- MDIFGQEGKTRQFVEKIQACLPFEIRENDNLPKNVCSRCIYNLENFYDFRTACVNAVALLKRYLPPSEALDRDINNYTQCSNVQFQKEKENIPIIIPEAPIVNPNAALGTPPRLNYSSEADHEIEEYLENGAMDEEATFDSDDRKSDEFELDMETNPSDFLEMPPMVTEDSEETSSKNIPTAMQNSTVFQHTLEQHEVYVCSLCTKAFSSKGHLSLHARIHTGAGNVIGQKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHKGHPAVTCGYCSRIYSTRLNLEEHVKSRHAGVLKSTKLLNPLYRSKPKYYCKTCSKMFTSIADLNIHSQLCVRHSIEVQSDIRSEITNMKELVIDTSDVSSWDTDDENKGFKNAEAKLAKNPQLTILKQALIKGSRMKRSAPDGEITPPKIMKMEDGEIQKWYCNICSKGFTSVEDFKKHETTHETDKPFICILCREEFALKSLLSNHILVLHGVDPNPLVDNNLCLKQIVLTKPWGQQMPIPISDQKDTKEPSEFVSSPEINIENEDENPDKSVPENSLDMETVFVCELCSRDFNDRASLWLHIRATHKEFAAFACGICLKICSDNIQLLNHVNKFHGGSKLLQSEQRRYSCTICGRQHDSRKKLIAHVSIHSFNSKRDPATYVQLNSNYCSETLNGNEANENILEYDGDEGEKIDCYTCCKTFPNEDHLIRHLRNAHKKEQINDVIGNGNSGNMNGTGNKAQCHLFYVCELCGNSHRSKWERWLHVSSEHSDEPSIKCEQEGCGKIFATKTLRNDHISHHNMQGPLPNTCEICGKLWNTRVDYWKHVMGVHHATVPLICGVCLKIFPNGMLLRTHVRTLHWPLTNADFSCDICGRPYANKSKMLKHRNIHRKKVDAYNNSINSNLNESSNYGHSVPSETTDLICEICVEMKFPNLESLCNHRRIVHGLFPCDLCNKYYGRTSHLWKHVNRVHKGHVDITCPYCLKTSASKDHLAGHIAKIHRYELEVTKDNKNSVNFKSSNGEEVALHYCEKCNKGFYKRYLLRRHMKACQNYRKDPGALLTRCRACERIFKDRASLRKHIENHHSNYTCHLCDETVTSKLGIMTHNRINHMNHPDLTCTNCKKLFRTKEDLESHKKDHRYHMSPNVCDYCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDEHESVLSMPNTCHVCGKQYASKWKAFDHTNKCHGKVFIPCKHCLAVFTTDEDIKDHYEHVHNISKNHVALLEDRMDVPVDIIVKEEPDDIDFDEDLCENDLNNSKGRRSLTDTFDCEMCPEIFLNFETLAKHYENVHNTNPIHMATKKNNDSKRKARNRKNFECIYCKKQFSTYSLFWNHVNVCERHSGFNMQNIASTSILETHLKNNNQIKKEEASSFMNETNLNIPDFNLFEDINLQLSAQKPVPKLMPLSHMKPPATKCSRKDSRKVYDESTNTECTCEVCGKPWPAKKHLWQHLIRFHKPQAAVTCGVCLKLCQSYQDLSDHLKATHAAILSCEGNNFTCKTCGRYHNARSKLLLHMSVHIDDIGTFWCQKCQRSFESESKFSEHLQICKKKIESTRSNSEDNMKNENENEEKGSLIGDETSVVEEVDEVEEVDEVEEVDEVDEVEEVDEVEEVEEVDEVDEVEELDEVEEYFDSLSEEDGATQEYTNSENSEHSGSLDSGSNNSTSNGEEAEGENDFEARSKSNNRTITTESDDTNSENVGAIKSQNLNDMNRFMIHNEDKEKNKDEKDNSKIKLLSPETIRDCNEISKQEEQDLNLTESLNGAKLSNFHVKKEGGRNQMDFTDEEDDGPPVLSPIMPLLEQESVQRNNPIDDARHKLSPMVTMNDVKTLEMCELPENCNDVERNTMSSMANPINYYENPDNNKMNINIEYGCEDFENMDNDEEEEEEEDNSMSTNEDGQMEIDEQMDIDEQNVDCNNENGYEKLDISINDSEMDSYEDNLDEEMKYDETRDTNVQIHDLNGAVLMVTNDSEGNQILIQPSVLTIRNEDCNAGTTAFIYEEANEYEMEDYGIVQQEGSSDDIHNMSFIQEESDNEEDSMEGIEITDTKEHNISAKSEQFNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01233144;
- 90% Identity
- -
- 80% Identity
- -