Pcan000828.1
Basic Information
- Insect
- Polistes canadensis
- Gene Symbol
- Prdm2
- Assembly
- GCA_001313835.1
- Location
- NW:210483-222147[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 32 1.2e-05 0.00075 18.9 1.0 1 23 260 282 260 282 0.98 2 32 0.002 0.12 12.0 1.9 1 23 305 328 305 328 0.96 3 32 0.00066 0.041 13.4 0.4 2 23 335 357 334 357 0.96 4 32 0.0019 0.12 12.0 0.4 1 19 377 395 377 398 0.94 5 32 0.0001 0.0064 16.0 0.5 2 23 489 510 488 510 0.96 6 32 0.25 16 5.3 0.1 2 23 517 539 516 539 0.90 7 32 0.004 0.25 11.0 0.6 1 23 612 635 612 635 0.93 8 32 0.0089 0.55 9.9 1.0 1 23 641 664 641 664 0.96 9 32 0.045 2.8 7.7 0.8 1 23 677 699 677 699 0.97 10 32 4.3e-05 0.0027 17.2 0.5 3 23 744 765 742 765 0.95 11 32 6.2 3.9e+02 0.9 0.4 1 23 796 819 796 819 0.84 12 32 0.012 0.72 9.5 0.7 2 23 826 849 825 849 0.94 13 32 0.45 28 4.5 0.2 2 23 858 880 858 881 0.91 14 32 0.011 0.69 9.6 0.5 2 23 887 909 886 909 0.96 15 32 3e-05 0.0019 17.6 0.5 1 23 917 939 917 939 0.98 16 32 0.24 15 5.4 0.5 2 23 972 995 971 995 0.91 17 32 0.00037 0.023 14.2 1.5 1 23 998 1021 998 1021 0.97 18 32 0.0024 0.15 11.7 0.2 2 23 1028 1050 1027 1050 0.95 19 32 0.00013 0.0078 15.7 2.6 1 21 1077 1097 1077 1098 0.95 20 32 0.0023 0.14 11.7 2.0 2 23 1112 1133 1111 1134 0.93 21 32 0.21 13 5.6 0.8 1 23 1137 1160 1137 1160 0.95 22 32 0.00037 0.023 14.2 1.8 2 23 1167 1188 1166 1188 0.95 23 32 0.49 30 4.4 0.1 2 23 1196 1218 1196 1218 0.94 24 32 2.6 1.7e+02 2.1 0.0 2 23 1225 1247 1224 1247 0.87 25 32 0.22 14 5.5 4.3 2 23 1256 1278 1256 1278 0.95 26 32 0.59 37 4.2 0.8 2 23 1284 1306 1283 1306 0.91 27 32 3.6 2.2e+02 1.7 0.7 1 19 1359 1377 1359 1382 0.89 28 32 0.047 3 7.6 2.5 1 21 1407 1427 1407 1432 0.91 29 32 0.097 6.1 6.6 1.2 2 23 1525 1547 1524 1547 0.94 30 32 7.6 4.7e+02 0.7 0.8 2 23 1554 1576 1553 1576 0.93 31 32 0.47 29 4.5 2.5 1 23 1587 1609 1587 1609 0.97 32 32 0.81 50 3.7 0.2 3 21 1618 1636 1616 1637 0.94
Sequence Information
- Coding Sequence
- atgacTGCAACTACGGCGataacaacaacgacgacgacaacgacgaagacgaaaacggcgacgacgaagacgaagacgaagacgaagacgacgacgacgacgaggacgacaacgatgacgatggAGTCTAGACAAAGTTATCATGGACTCTGCCGATTGTGTGCATCTTACGACGCTGTTATGATGGATATTTTCGGTCAGGAGGGCAAAACACGACAATTCGTCCAAAAAATTCAAGCTTGTTTGCCATTCCAGgTCAGAGAAAATGATAATCTTCCAAAGAGCGTATGCAGTCGTTGTATTTACAACCTGGAGAATTTTTATGACTTTAGGACAGCATGCCTCAATGCTGtgttattgttagaaaaacatttaccTCCAAGCGAAGCACTTGACAGTGATATAAATAACTATACGCAGTACAGTAATGTACAATttcaacaagaaaaagaaaatataccaATAATAATACCAGAAGCTCCCATAGTAAATCCCAATGCAGCTCTGGGTACACCACCAAGATTAAATTACAGTGGTGAAGTGGATCatgaaatagaagaatatcTTGAAAATGGTGCCACGGATGAAGAGGCAACGTTTGATTCGGATGATAGAAAATCAGATGAATTTGAATTGGATATGGAAACTAATCCTAGTGATTTCTTAGAAATGCCCCCAATGGTAACTGAAGATAACGAAGAAACGAGTTCCAAAAATATCCCTACAGCAATGCAAAATTCTACAGTATTTCAACATACGTTGGAGCAACATgaagtgtatgtgtgttcgtTGTGTACCAAAGCATTTAGTTCCAAAGGACATTTGTCCCTTCATGCGAGAATTCATACAGGCGCGGGCAATGTTATTGGTCAGAAGGTTATCACCGATGATCATACTTCTTATAAAAGGCCTTATCAGTGTGATCTCTGTAACAAATCTTATTCAACAGCTAAACATCGATGGGGACATGTATCTACGACGCACAAaGGACATCCTGCTGTTACATGTGGGTATTGTTCACGCATTTATTCAACCAGAATGAATTTGGAAGAACATGTTAAATCTCGACATGCAGGTGTTTTGAAATCAACTAAATTACTAAATCCTCTTTATCGCTCAAAAccgaaatattattgtaaaacgTGTTCAAAAATGTTCACAAGTATAACTGACTTAAATATTCATAGTCAACTTTGTGTGAGACACTCAATTGAAGTACAATCTGATATTAGAAGCGGAATAACCAATATGAAAGAACTGGTGATTGATACTTCGGATGTATCGAGTTGGGATACagatgatgaaaataaaggATTTAAAAATGCAGAAGCAAAATTAGCGAAAAATCCACAACTTACGATATTGAAACAAGCGTTGATTAAAGGGAGTAAAAGAAGTGCTCCAGATGGAGAAGTTAATCCACCTAAGATAATGAAAATGGAGGATGGTGAAATTCAGAAGTGGTACTGTAACATATGTTCTAAAGGTTTTACATCGGTAGAAGATTTGAAAAAACACGAGACTACGCATGAAACCGATAAAccttttatatgtatattgtgtAGAGAAGAATTTGCTTTAAAATCATTGCTTAGTAATCATATTTTGGTATTGCATGGAGTTGACCCAAATCCTCttgtagataataatttatgtttaaaacaaattgttcTTACGAAACCATGGGGTCAACAGATGCCGATACCTATATCCGATCAAAAAGATACGAAGGAACCTTCAGAGTTTGTTTCGTCTCCAGAAataaatatagaaaatgaagatgaaaatCCAGATAGAAATGTCCCTGAAAATTCACTGGATATGGAGACTGTTTTTTTATGTGAATTATGTTCACGGGAATTTCATGATAGAGCATCGTTGTGGTTACATATCCGTGCGACGCACAAAGAATATGCTGCTTTTGCTTGTGGAGTCTGTTTGAAAATATGTTCCAACAATAAACAACTTGTAAGTCACGTTAATATGTTTCATGGAGGATCAAAATTGCTTATATCTGAACAGAGAAGgtATAGCTGCACAATATGTGGAAGACAACACGATTCACGAAAAAAGTTAATCGCTCATGTATCgatacataatattaatactacaCTTGATCCCGCAAATTATGTACagttaaatagtaatttttgtAGCGAAACGTTAAATGGTAATGAAgcaaacgaaaatattttggaGTATGATGGAGATGAGGGAGAAAAAATAGACTGCTATATATGTTACAAATCATTTCCAAATGAAGACCATCTTGTAAGACACTTGAGGAATGCTCATaagAACGAGCAAATAACCGATGTCCTTGGTGGTAATAGGAATTCAGGAAATATGAATGGTACTGGTAATAAGGCACaatgtcatttattttatgtctGTGAACTTTGTGGTAATTCGCATCGTAGTAAATGGGAACGTTGGTTACATGTCAGTAGTGAGCATAGCGATGAACCATCTATCAAGTGCGAACAGGAAGGCTGcggaaaaatatttgctaccAAAACATTACGCAATGATCACATAAGTCATCATAATATGCAAGGCTCTTTGCCAAATACCTGTGAAATTTGTGGTAAATTATGGAACACTCGAGTGGATTATTGGAAGCACGTGATGGGAGTACATCATGCAACAGTGCCGCTTATATGTGGTGTTTGtctgaaaatatttccaaactGTTTGCTTCTTAGAACGCACGTGAGAACTCTGCATTGGCCATTGACAAATGCTGATTTTAGTTGTGATATATGTGGAAGACCTTATGCTAACAAATCTAAAATGTTAAAACATAGAAATATTCATAGAAAGAAAGTTGATGCATATAACAACAGTATTAATTCTAACTTGAACGAATCGTCAAATTATGGGCATAGTGTACCACCGGAAACGACGGATTTAACATGTGAAATTTgtgttgaaatgaaatttccaAATTTGGAAAGTTTATGCAATCACAGACGTATTGTGCATGGTCTATTTCCGTGCGATCTTTGTAACAAATATTACGGCAGAACGTCTCATTTATGGAAACATGTAAATAGAGTACATAAAGGTCACGTAGATATAACGTGTCCTTACTGTTTGAAAACGAGTGCGTCTAAAGATCATTTAGCAGGACATATCGCTAAAATTCATAGGTATGAGTTAGAAGTTACAAAGGATAATAAGAATTCagtaaattttaaatcttctAACGGAGAAGAAGTGGCTTTACATTATTGTGAGAAATGTAATAAGggattttataaaagatatttacttAGACGTCATATGAAAGCTTGTCAGAACTATCGGAAAGATCCAGGAGCATTATTGACTCGTTGTCGTGCTTGTGAAAGAATATTCAAAGATCGTGCGAGTCTACGAAAGCATATTGAGAATCATCATAGCAATTATACTTGTCATTTATGTGAGGAGACTGTTACTTCGAAATTGGGTATTATGACTCATAATCGCATCAATCACATGAACCATCCAGATTTGACTTGCactaattgtaataaattattcagaACTAAAGAAGATTTAGAGTCTCATAAAAAAGATCATAGATATCACATGAGTCCGAATGTTTGTGATTACTGTGGAGATACAGTAGAGAAtaaacttaaattaaaaatgcacGTACTATCGTTACATCGAAATGAAATAGGAGTATCTTGCGGAGTCTGTTTGATACCTATGAAAGATCCTAAAGATTTGAAGAAACACGTCGAAGATGAACATGAAAGTGTTTTATCCATGCCAAATACATGCCACGTATGTGGAAAACAGTATGCATCCAAATGGAAAGCTTTTGatcatacaaataaatgtCATGGAAAGGTATTTATACCATGTAAACATTGTTTAGCTGTTTTTACAACCGATGAAGATATCAAAGATCACTATGAACACGttcataatatttctaaaaatcatGTAGCTCTATTAGAAGATCGTATGGATGTGCCAGTGGATATCATTGTTAAAGAAGAACCAGATGATATCGATTTTGACGAAGATTTATGTgagaatgatttaaataattctaaaggAAGAAGATCATTAACCGATACCTTTGATTGCGAGATGTGTccagaaatatttcttaattttgaAACATTAGCGAAACATTGTGAAAATGTTCACAATACAAATCCAATTCATATgtcttcaaagaaaaataatgatagtaAACGAAAAGCGAGGAATCGAAAGAATTTCGAATGTATCTATTgcaaaaaacaattttctacttACAGTTTATTCTGGAATCACGTTAATGTATGCGGCAGACATAGTGGATTTGACATGCAAAATATTGCATCTACGTCTATTTTAGAaactcatttaaaaaataataatcagataaagaaggaagaagctTCGTCGTTTATGAACGAAACGAATTTGAACATTccagattttaatttatttgaagatATAAATCTACAATTATCAGCGCAGAAACCTGTACCAAAACTTATGCCATTGTCGCATATGAAACCACCCGCAACTAAATGTTCGAGAAAAGATTCTCGGAAAGTATATGACGAATCAACGAATACCGAATGTACGTGTGAAGTTTGCGGTAAACCATGGCCCGCCAAAAAACATCTTTGGCAACATCTTATTCGTTTCCATAAACCACAAGCGGCAGTAACCTGTGgtgtttgtttaaaattatgtcAATCTTATCAAGACTTATCTGATCACTTAAAGGCTACGCATGCAGCGATATTATCTTGCGAAGGGAATAATTTCACGTGTAAAACTTGTGGCAGATATCACAATGCTagaagtaaattattattacatatgaGCGTTCATATTGATGACATTGGACCATTTTGGTGTCAGAAATGTCAAGGAAGTTTTGAAAGTGAGAGTAAATTTTCCGAGCATCTactaatatgtaaaaagaaaatcgaatcgACGAGAAGTAATTCGGAAGATAATATGAAGAATGAGAATGAAGAGAAAGGTAGTTTGATAGGTGATGAGACTTCGGTCGTCGAAGAAGTGGATGAGGTAGAAGTAGATGAAGTTGAGGAAGTTGAAGAAGTCGACGAAGTAGAAGTCGACGAAGTAGAAGTCGACGAAGTAGAAGAAGTCGATGAAGTAGAAGTCGACGAAGtagaagaatattttgatTCCTTATCGGAAGAAGATGGTGCTACTCAGGAATACACTAATAGTGAAAATTCAGAGCATTCTGGGAGTTTGGACAGTGGCAGTAATAATAGTACGAGCAATGGAGAGGAAGCAGAAggagaaaatgattttgaagCTAGGTCTAAATCTAATAACAGAACTATTGCTACCGAAAGTGACGATACTAATTCGGAAAATGTAGGGgcgattaaaaatcaaaatttaaacgaTATGAATCGTTTTATGATACACAACGAAGATacggaaaaaaataaggatgAGAAGGATAATtcgaaaatcaaattattgagTCCTGAAACTATAAGAGATTgcaatgaaataaacaaacaagaagaacaagatTTGAATTTAACTGAATCCTTGAACGGCGCTAAATTGAGTAATTTTCAcgtaaagaagaaggaaggaggaagaagccAAATGGATTTTacagatgaagaagatgacgGTCCACCTGTTTTGAGTCCAATAATGCCTTTATTAGAACAGGAATCGGTACAGCGTAATAATCCAATAGATGACACGAGACACAAGCTTAGTCCAATGGTAACAATGAATGACGATAAAACATTGGAAATATGCGAATTACCTGAAAATTGTAACGATGTTGAAAGAAATACTATGTCATCGATGGCCAatcctattaattattatgaaaattctGATAACAATAagatgaatattaatattgaatatgGATGCGAGGATTTTGAAAATATGGAtaatgacgaagaagaagaagaagaagaagatagtatGTCAACCAATGAAGATGGTCAAATGGAAATAGATGAGCAAATGGATATAGACGAACAAAACGTAGATTGTAATAATGAGAATGGATACGAAAAACTGGACATTAGTATCAATGATTCCGAGATGGATTCTTATGAAGATAATTTAgatgaagaaatgaaatatgacGAGACTAGAGATACTAACGTACAAATTCATGATTTGAATGGAGCTGTTTTAATGGTAACTAATGATTCCGAgggtaatcaaattttaattcaacCAAGCGTATTAACTATAAGAAACGAGGATTGTAACGCAGGTACGACAGCATTCATTTATGATGAAGCGAATGAGTACGAAATGGAAGATTACGGGATAGTACAGCAAGAAGGAAGTTCTGACGACATTCACAATATGTCGTTCATTCAAGAAGAATCTGATAATGAGGAGGATAGCATGGAAGGTATCGAAATAACTGATACAAAAGAACATAATATTAGTGCCAAAAGCGAACAATTTAACGTATAA
- Protein Sequence
- MTATTAITTTTTTTTKTKTATTKTKTKTKTTTTTRTTTMTMESRQSYHGLCRLCASYDAVMMDIFGQEGKTRQFVQKIQACLPFQVRENDNLPKSVCSRCIYNLENFYDFRTACLNAVLLLEKHLPPSEALDSDINNYTQYSNVQFQQEKENIPIIIPEAPIVNPNAALGTPPRLNYSGEVDHEIEEYLENGATDEEATFDSDDRKSDEFELDMETNPSDFLEMPPMVTEDNEETSSKNIPTAMQNSTVFQHTLEQHEVYVCSLCTKAFSSKGHLSLHARIHTGAGNVIGQKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHKGHPAVTCGYCSRIYSTRMNLEEHVKSRHAGVLKSTKLLNPLYRSKPKYYCKTCSKMFTSITDLNIHSQLCVRHSIEVQSDIRSGITNMKELVIDTSDVSSWDTDDENKGFKNAEAKLAKNPQLTILKQALIKGSKRSAPDGEVNPPKIMKMEDGEIQKWYCNICSKGFTSVEDLKKHETTHETDKPFICILCREEFALKSLLSNHILVLHGVDPNPLVDNNLCLKQIVLTKPWGQQMPIPISDQKDTKEPSEFVSSPEINIENEDENPDRNVPENSLDMETVFLCELCSREFHDRASLWLHIRATHKEYAAFACGVCLKICSNNKQLVSHVNMFHGGSKLLISEQRRYSCTICGRQHDSRKKLIAHVSIHNINTTLDPANYVQLNSNFCSETLNGNEANENILEYDGDEGEKIDCYICYKSFPNEDHLVRHLRNAHKNEQITDVLGGNRNSGNMNGTGNKAQCHLFYVCELCGNSHRSKWERWLHVSSEHSDEPSIKCEQEGCGKIFATKTLRNDHISHHNMQGSLPNTCEICGKLWNTRVDYWKHVMGVHHATVPLICGVCLKIFPNCLLLRTHVRTLHWPLTNADFSCDICGRPYANKSKMLKHRNIHRKKVDAYNNSINSNLNESSNYGHSVPPETTDLTCEICVEMKFPNLESLCNHRRIVHGLFPCDLCNKYYGRTSHLWKHVNRVHKGHVDITCPYCLKTSASKDHLAGHIAKIHRYELEVTKDNKNSVNFKSSNGEEVALHYCEKCNKGFYKRYLLRRHMKACQNYRKDPGALLTRCRACERIFKDRASLRKHIENHHSNYTCHLCEETVTSKLGIMTHNRINHMNHPDLTCTNCNKLFRTKEDLESHKKDHRYHMSPNVCDYCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDEHESVLSMPNTCHVCGKQYASKWKAFDHTNKCHGKVFIPCKHCLAVFTTDEDIKDHYEHVHNISKNHVALLEDRMDVPVDIIVKEEPDDIDFDEDLCENDLNNSKGRRSLTDTFDCEMCPEIFLNFETLAKHCENVHNTNPIHMSSKKNNDSKRKARNRKNFECIYCKKQFSTYSLFWNHVNVCGRHSGFDMQNIASTSILETHLKNNNQIKKEEASSFMNETNLNIPDFNLFEDINLQLSAQKPVPKLMPLSHMKPPATKCSRKDSRKVYDESTNTECTCEVCGKPWPAKKHLWQHLIRFHKPQAAVTCGVCLKLCQSYQDLSDHLKATHAAILSCEGNNFTCKTCGRYHNARSKLLLHMSVHIDDIGPFWCQKCQGSFESESKFSEHLLICKKKIESTRSNSEDNMKNENEEKGSLIGDETSVVEEVDEVEVDEVEEVEEVDEVEVDEVEVDEVEEVDEVEVDEVEEYFDSLSEEDGATQEYTNSENSEHSGSLDSGSNNSTSNGEEAEGENDFEARSKSNNRTIATESDDTNSENVGAIKNQNLNDMNRFMIHNEDTEKNKDEKDNSKIKLLSPETIRDCNEINKQEEQDLNLTESLNGAKLSNFHVKKKEGGRSQMDFTDEEDDGPPVLSPIMPLLEQESVQRNNPIDDTRHKLSPMVTMNDDKTLEICELPENCNDVERNTMSSMANPINYYENSDNNKMNINIEYGCEDFENMDNDEEEEEEEDSMSTNEDGQMEIDEQMDIDEQNVDCNNENGYEKLDISINDSEMDSYEDNLDEEMKYDETRDTNVQIHDLNGAVLMVTNDSEGNQILIQPSVLTIRNEDCNAGTTAFIYDEANEYEMEDYGIVQQEGSSDDIHNMSFIQEESDNEEDSMEGIEITDTKEHNISAKSEQFNV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01233144;
- 90% Identity
- -
- 80% Identity
- -