Basic Information

Gene Symbol
Prdm2
Assembly
GCA_010416935.1
Location
QUOI01000004.1:6377471-6386079[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 32 1.5e-05 0.0012 18.9 1.0 1 23 257 279 257 279 0.98
2 32 0.0025 0.19 11.9 1.9 1 23 302 325 302 325 0.96
3 32 0.0022 0.17 12.1 0.4 2 23 332 354 331 354 0.96
4 32 0.0021 0.16 12.2 0.2 1 19 374 392 374 395 0.94
5 32 0.00045 0.036 14.3 0.7 2 23 488 509 487 509 0.96
6 32 0.31 25 5.3 0.1 2 23 516 538 515 538 0.90
7 32 0.00033 0.026 14.7 0.1 1 23 611 634 611 634 0.96
8 32 0.015 1.2 9.5 0.7 1 23 640 663 640 663 0.96
9 32 0.056 4.4 7.7 0.8 1 23 676 698 676 698 0.97
10 32 2.5e-05 0.002 18.2 0.8 2 23 742 764 741 764 0.95
11 32 7.7 6.1e+02 0.9 0.4 1 23 794 817 794 817 0.84
12 32 0.014 1.1 9.5 0.7 2 23 824 847 823 847 0.94
13 32 0.57 45 4.5 0.2 2 23 856 878 856 879 0.91
14 32 0.068 5.4 7.4 0.1 2 23 885 907 884 907 0.95
15 32 3.8e-05 0.003 17.6 0.5 1 23 915 937 915 937 0.98
16 32 0.3 23 5.4 0.5 2 23 970 993 969 993 0.91
17 32 0.00047 0.037 14.2 1.5 1 23 996 1019 996 1019 0.97
18 32 0.003 0.24 11.7 0.2 2 23 1026 1048 1025 1048 0.95
19 32 0.00016 0.012 15.7 2.6 1 21 1075 1095 1075 1096 0.95
20 32 0.0028 0.23 11.7 2.0 2 23 1110 1131 1109 1132 0.93
21 32 0.074 5.8 7.3 0.9 1 23 1135 1158 1135 1158 0.95
22 32 0.00092 0.073 13.3 2.2 2 23 1165 1186 1164 1186 0.95
23 32 0.61 48 4.4 0.1 2 23 1194 1216 1194 1216 0.94
24 32 3.3 2.6e+02 2.1 0.0 2 23 1223 1245 1222 1245 0.87
25 32 0.27 22 5.5 4.3 2 23 1254 1276 1254 1276 0.95
26 32 0.73 58 4.2 0.8 2 23 1282 1304 1281 1304 0.91
27 32 0.33 26 5.2 0.1 1 23 1357 1380 1357 1380 0.93
28 32 0.068 5.4 7.4 2.7 1 21 1405 1425 1405 1430 0.91
29 32 0.12 9.6 6.6 1.2 2 23 1523 1545 1522 1545 0.94
30 32 9.4 7.5e+02 0.7 0.8 2 23 1552 1574 1551 1574 0.93
31 32 0.59 47 4.5 2.5 1 23 1585 1607 1585 1607 0.97
32 32 0.029 2.3 8.5 0.5 3 21 1616 1634 1614 1635 0.94

Sequence Information

Coding Sequence
atgattgcaacgacgacgacgacaacgaccaAGACGAAAACGGCGACGACGaaaacgaagacgaagacgaaaacgacgacgacgacgacgacgaggactaCAACGATGATGATGGAGTCTAGACAAAGTTATCATGGACTCTGCCGATTGTGTGCATCTTACGACGCTGTTATGATGGATATTTTCGGTCAGGAGGGCAAAACCCGACAATTCGTCGAGAAAATTCAAGCTTGTTTGCCATTCAAGatCAGAGAAAATGATAATCTTCCAAAGAACGTATGCAGTCGTTGTATTTACAACCTGGAGAATTTTTATGACTTTAGGACAGCATGCGTCAATGCTGTGGCATTGTTAAAAAGACATTTACCTCCAAGCGAAGCACTTGACAGAGATATAAATAACTATACGCAATGCAGTAATGTacaatttcaaaaagaaaaagaaaatataccaATAATAATACCAGAAGCTCCCATAGTAAATCCCAATGCAGCTCTGGGTACACCACCAAGATTAAATTACAGCGGTGAAGTGGATCATGAAATAGAAGAATATCTTGAAAATGGTGCCATGGATGAAGAGGCAACGTTTGATTCAGATGATAGAAAATCAGATGAATTTGAATTGGATATGGAAACTAATCCTAGTGATTTCTTAGAAATGCCCCCAATGGTAACTGAAGATAGCGAAGAAACGAGTTCCAAAAATATCCCTACAGCAATGCAAAATTCTACAGTATTTCAACATACGTCGGAGCAACATGaagtgtatgtgtgttcgTTGTGTACCAAAGCATTTAGTTCCAAAGGACACTTGTCCCTTCATGCGAGAATTCATACAGGCGCGGGCAATGTTATTGGTCAGAAGGTTATCACCGATGATCATACTTCTTATAAAAGGCCTTACCAATGTGATCTCTGTAACAAATCTTATTCAACAGCGAAACACCGATGGGGACATGTATCTACGACGcacaaAGGACATCCTGCTGTTACATGTGGGTATTGTTCACGCATTTATTCAACCAGATTGAATTTGGAAGAACATGTTAAATCTCGACATGCAGGAGTATTGAAATCAACCAAATTACTAAATCCTCTTTATCGCTCAAAAccgaaatattattgtaaaacgTGTTCAAAAATGTTCACAAGTATAGCTGACTTAAATATTCATAGTCAACTTTGTGTGAGACACTCAATTGAAGTACAATCTGATATTAGAAGCGGAATAACTAATATGAAAGAACTGGTGATTGATACTTCGGATGTATCGAGTTGGGATACAGATGATGAAAACaaaggatttaaaaatgcGGAAGCAAAATTAGCGAAAAATCCACAACTTACGATATTGAAACAAGCGTTGATTAAAGGAAGCAGGATGAAAAGAAGTGCTCCAGATGGAGAAATTACTCCACCTAAGATAATGAAAATGGAGGATGGTGAAATTCAGAAGTGGTACTGTAACATATGTTCTAAAGGTTTTACATCGGtagaagattttaaaaaacacgAGACTACGCATGAAACCGATAAAccttttatatgtatattgtgtAGAGAAGAATTTGCTTTAAAATCATTGCTCAGTAATCATATTTTGGTATTGCATGGGGTTGATCCAAATCCTCttgtagataataatttatgtttaaaacaaattgtGCTTACGAAACCATGGGGTCAACAGATGCCGATACCTATATCCGATCAAAAAGATACGAAGGAACCTTCGGAGTTTGTTTCGTCTCCAGAAataaatatagaaaatgaagatgaaaatCCAGATAGAAGTGTCCCTGAAAATTCATTGGATATGGAGACCGTTTTTGTATGTGAATTATGTTCACGGGATTTTAATGATAGAGCATCGTTGTGGTTACATATCCGTGCGACGCACAAAGAATTTGCTGCTTTTGCTTGTGGAATCTGTTTGAAAATATGTTCCGACAATATACAGCTTCTAAACCACGTTAATAAGTTTCATGGAGGATCAAAATTGCTTGTATCTGAACAGAGAAGgtATAGCTGCACAATATGTGGAAGACAACACGATTCACGAAAAAAGTTAATCGCTCATGTATCGATACAtagttttatttctaaatgtgATCCCGCAACTTATGTACAGttaaatagtaattattatagcGAAACGTTAAATGGTAATGaagcaaatgaaaatattttggaGTATGATGGAGATgagggagaaaaaatatactgcTTTATATGTTACAAATCATTTCCAAATGAAGACCATCTTATAAGACACCTGAGGAATGCTCATaagAACGAGCAAATAAACGACGTCATTGGTAATGGGAATTCAGGAAATATGAATGGTACTGGTAATAAGGCACaatgtcatttattttatgtctGTGAACTTTGTGGTAATTCGCATCGTAGTAAATGGGAACGTTGGTTACATGTCAGTAGTGAGCATAGCGATGAACCATCTATCAAGTGCGAACAGGAAGGCTGCGGAAAAATATTTGCTACCAAAACATTACGCAATGATCACATTAGTCATCATAATATGCAAGGCCCTTTGCCAAATACCTGTGAAATTTGTGGTAAATTATGGAACACTCGAGTCGATTATTGGAAGCACGTGATGGGAGTACATCATGCAACAGTGCCGCTTATATGCGGTGTTTGtctgaaaatatttccaaacgGTTTGCTTCTTAGAACGCATGTGAGAACTCTGCATTGGCCATTGACAAATGCTGATTTTAGTTGCGATATATGTGGAAGACCTTACGCCAACAAatctaaaatgttaaaacataGAAATATTCATAGAAAGAAAGTTGATGCATATAACAACAGTATTAATTCTAACTTGAACGAATCGTCAAATTATGGGCATAGCGTACCGCCGGAAACGACGGATTTAACATGTGAAATTTgcgttgaaatgaaatttccaAATTTGGAAAGTTTATGCAATCACAGACGTATTGTGCATGGTCTATTTCCGTGCGATCTTTGTAACAAATATTACGGTAGAACGTCTCATTTATGGAAACATGTAAATAGAGTACATAAAGGTCACGTAGATATAACGTGTCCTTACTGTTTGAAAACGAGTGCGTCTAAAGACCATTTAGCAGGACATATCGCTAAAATTCATAGGTATGAGTTAGAAGTTACaaaggataataaaaattcagtaaattttaaatcttctAACGGAGAAGAAGTGGCTTTACATTATTGTGAGAAATGTAATAAAggattttataaaagatatttacttAGACGTCATATGAAAGCTTGTCAGAACTATCGGAAAGATCCAGGAGCATTATTGACTCGTTGTCGCGCTTGTGAAAGAATATTCAAAGATCGTGCGAGTCTACGAAAGCATATTGAGAATCATCATAGCAATTATACTTGTCATTTATGTGATGAGACTGTTACTTCGAAATTGGGTATTATGACCCATAATCGTATCAATCACATGAACCATCCAGATTTGACTTGcactaattgtaaaaaattattccgaACTAAAGAAGATTTAGAGTCTCATAAAAAGGATCATAGATATCACATGAGTCCGAACGTTTGTGATTACTGTGGAGATACAGTAGAGAATaaacttaaattaaaaatgcacGTGTTATCGTTACATCGAAATGAAATAGGAGTCTCTTGCGGAGTATGTTTGATACCTATGAAAGATCCTAAAGATTTGAAGAAACACGTCGAAGACGAACATGAAAGTGTTTTATCCATGCCAAATACATGCCACGTATGTGGAAAACAGTATGCTTCCAAATGGAAAGCTTTTGATCATACAAATAAATGTCATGGAAAGGTATTTATACCATGTAAACATTGTTTAGCTGTTTTTACAACAGATGAAGATATCAAAGATCATTATGAACACGttcataatatttctaaaaatcatGTAGCTCTATTAGAAGATCGTATGGATGTGCCAGTGGATATCATTGTTAAAGAAGAACCAGATGATATCGATTTTGACGAGGATTTGTGTGagaatgatttaaataattctaaaggAAGAAGATCATTAACCGATACCTTTGATTGCGAGATGTGCCCAGAAATATTCCTTAATTTTGAAACATTAGCGAAACATTATGAAAATGTTCACAATACAAATCCAATTCATATGgctacaaagaaaaataatgatagtaAACGAAAAGCGAGGAATCGAAAGAATTTCGAATGTATCTATTGcaagaaacaattttctacttaCAGTTTATTCTGGAATCACGTTAATGTATGCGAAAGACATAGTGGATTTAACATGCAAAACATTGCATCTACGTCTATTTTAGAaactcatttaaaaaataataatcagataaagaaggaagaagctTCGTCGTTTATGAACGAAACGAATTTGAACATTccagattttaatttatttgaagatATAAATCTACAATTATCGGCGCAGAAACCTGTACCAAAACTTATGCCATTGTCGCATATGAAACCACCCGCAACTAAATGTTCGAGAAAAGATTCTCGGAAAGTATATGACGAATCAACGAATACCGAATGTACGTGTGAAGTTTGCGGTAAACCATGGCCCGCCAAGAAACATCTTTGGCAACATCTTATTCGTTTTCATAAACCACAAGCTGCAGTAACCTGTGGcgtttgtttaaaattatgtcaatcttatcaagactTATCCGATCACTTAAAGGCTACGCATGCAGCGATATTATCTTGCGAAGGGAATAATTTCACGTGTAAAACTTGTGGCAGATATCACAATGCTagaagtaaattattattacatatgaGCGTTCATATTGATGACATTGGAACATTTTGGTGTCAGAAATGCCAAAGAAGTTTTGAAAGCGAGAGTAAATTTTCCGAGCATCTACAAATatgtaagaagaaaatcgaATCGACGAGAAGTAATTCGGAAGATAATATGAAGAATGAGAATGAAGAGAAAGGTAGTTTGATAGGTGATGAGACTTCGGTCGTCGAAGAAGTGgatgaagtagaagaagtagatgaagtagaagaagtggatgaagtagaagaagtagaagaagtagatgaagtagaagaagtagaagaagtagaagaagtggaagaagtggatgaagtagaagaagtGGATGAAGtagaagaatattttgattCCTTATCGGAAGAAGATGGTGCTACTCAGGAATACACTAATAGTGAAAATTCAGAGCATTCTGGGAGTTTGGACAGTGGCAGTAATAATAGTACGAGCAATGGAGAGGAAGCAGAAggagaaaatgattttgaagCTAGGTCTAAATCTAATAACAGAACTATTACTACCGAAAGTGACGATACTAATTCGGAAAATGTAGGGGCGATTAAAAgtcaaaatttaaatgatatgaaTCGTTTCATGATACACAACgaagataaggaaaaaaataaggacGAGAAAGATAATtcgaaaatcaaattattgagTCCTGAAACAATAAGAGATTGCAATGAAATAAGCaaacaagaagaacaagatTTGAATTTAACTGAATCCTTGAACGGCGCTAAATTGAGCAATTTTCACGTaaagaaggaaggaggaagaaacCAAATGGATTTTACGGATGAAGAAGATGACGGTCCACCTGTTTTGAGTCCAATAATGCCTTTATTAGAACAGGAATCGGTACAGCGTAATAATCCAATAGATGACGCGAGACATAAGCTTAGTCCAATGGTAACAATGAATGACGTTAAAACATTGGAAATGTGCGAATTACCTGAAAATTGTAACgatgttaaaagaaatactaTGTCATCGATGGCCAatcctattaattattatgaaaatccTGATAACAATAagatgaatattaatattgaatatggATGCGAGGATTTTGAAAATATGGATaatgacgaagaagaagaagaagaagaagaagaagaagataatagtATGTCAACAAATGAGGATGGACAAATGGAAATAGATGAGCAAATGGATATAGACGAACAAAACGTAGATTGTAATAATGAGAATGGATACGAAAAACTGGACATTAGTATCAATGATTCCGAGATGGATTCTTATGAAGATAATTTAGACGAGGAAATGAAATATGACGAGACTAGGGATACTAACGTACAAATTCATGATTTGAATGGAGCTGTTTTAATGGTAACTAATGATTCCGAgggtaatcaaattttaattcaaccAAGCGTATTAACTATAAGAAACGAGGATTGTAACGCAGGTACAACAGCATTCATTTATGAAGAAGCGAATGAGTACGAAATGGAAGATTACGGGATAGTACAGCAGGAAGGAAGTTCTGACGACATTCACAATATGTCGTTCATTCAAGAAGAATCTGATAATGAGGAGGATAGCATGGAAGGTATCGAAATAACTGATACGAAAGAACATAATATTAGTGCCAAAAGCGAACAATTTAACGTATAA
Protein Sequence
MIATTTTTTTKTKTATTKTKTKTKTTTTTTTRTTTMMMESRQSYHGLCRLCASYDAVMMDIFGQEGKTRQFVEKIQACLPFKIRENDNLPKNVCSRCIYNLENFYDFRTACVNAVALLKRHLPPSEALDRDINNYTQCSNVQFQKEKENIPIIIPEAPIVNPNAALGTPPRLNYSGEVDHEIEEYLENGAMDEEATFDSDDRKSDEFELDMETNPSDFLEMPPMVTEDSEETSSKNIPTAMQNSTVFQHTSEQHEVYVCSLCTKAFSSKGHLSLHARIHTGAGNVIGQKVITDDHTSYKRPYQCDLCNKSYSTAKHRWGHVSTTHKGHPAVTCGYCSRIYSTRLNLEEHVKSRHAGVLKSTKLLNPLYRSKPKYYCKTCSKMFTSIADLNIHSQLCVRHSIEVQSDIRSGITNMKELVIDTSDVSSWDTDDENKGFKNAEAKLAKNPQLTILKQALIKGSRMKRSAPDGEITPPKIMKMEDGEIQKWYCNICSKGFTSVEDFKKHETTHETDKPFICILCREEFALKSLLSNHILVLHGVDPNPLVDNNLCLKQIVLTKPWGQQMPIPISDQKDTKEPSEFVSSPEINIENEDENPDRSVPENSLDMETVFVCELCSRDFNDRASLWLHIRATHKEFAAFACGICLKICSDNIQLLNHVNKFHGGSKLLVSEQRRYSCTICGRQHDSRKKLIAHVSIHSFISKCDPATYVQLNSNYYSETLNGNEANENILEYDGDEGEKIYCFICYKSFPNEDHLIRHLRNAHKNEQINDVIGNGNSGNMNGTGNKAQCHLFYVCELCGNSHRSKWERWLHVSSEHSDEPSIKCEQEGCGKIFATKTLRNDHISHHNMQGPLPNTCEICGKLWNTRVDYWKHVMGVHHATVPLICGVCLKIFPNGLLLRTHVRTLHWPLTNADFSCDICGRPYANKSKMLKHRNIHRKKVDAYNNSINSNLNESSNYGHSVPPETTDLTCEICVEMKFPNLESLCNHRRIVHGLFPCDLCNKYYGRTSHLWKHVNRVHKGHVDITCPYCLKTSASKDHLAGHIAKIHRYELEVTKDNKNSVNFKSSNGEEVALHYCEKCNKGFYKRYLLRRHMKACQNYRKDPGALLTRCRACERIFKDRASLRKHIENHHSNYTCHLCDETVTSKLGIMTHNRINHMNHPDLTCTNCKKLFRTKEDLESHKKDHRYHMSPNVCDYCGDTVENKLKLKMHVLSLHRNEIGVSCGVCLIPMKDPKDLKKHVEDEHESVLSMPNTCHVCGKQYASKWKAFDHTNKCHGKVFIPCKHCLAVFTTDEDIKDHYEHVHNISKNHVALLEDRMDVPVDIIVKEEPDDIDFDEDLCENDLNNSKGRRSLTDTFDCEMCPEIFLNFETLAKHYENVHNTNPIHMATKKNNDSKRKARNRKNFECIYCKKQFSTYSLFWNHVNVCERHSGFNMQNIASTSILETHLKNNNQIKKEEASSFMNETNLNIPDFNLFEDINLQLSAQKPVPKLMPLSHMKPPATKCSRKDSRKVYDESTNTECTCEVCGKPWPAKKHLWQHLIRFHKPQAAVTCGVCLKLCQSYQDLSDHLKATHAAILSCEGNNFTCKTCGRYHNARSKLLLHMSVHIDDIGTFWCQKCQRSFESESKFSEHLQICKKKIESTRSNSEDNMKNENEEKGSLIGDETSVVEEVDEVEEVDEVEEVDEVEEVEEVDEVEEVEEVEEVEEVDEVEEVDEVEEYFDSLSEEDGATQEYTNSENSEHSGSLDSGSNNSTSNGEEAEGENDFEARSKSNNRTITTESDDTNSENVGAIKSQNLNDMNRFMIHNEDKEKNKDEKDNSKIKLLSPETIRDCNEISKQEEQDLNLTESLNGAKLSNFHVKKEGGRNQMDFTDEEDDGPPVLSPIMPLLEQESVQRNNPIDDARHKLSPMVTMNDVKTLEMCELPENCNDVKRNTMSSMANPINYYENPDNNKMNINIEYGCEDFENMDNDEEEEEEEEEEDNSMSTNEDGQMEIDEQMDIDEQNVDCNNENGYEKLDISINDSEMDSYEDNLDEEMKYDETRDTNVQIHDLNGAVLMVTNDSEGNQILIQPSVLTIRNEDCNAGTTAFIYEEANEYEMEDYGIVQQEGSSDDIHNMSFIQEESDNEEDSMEGIEITDTKEHNISAKSEQFNV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01233144;
90% Identity
iTF_01235177;
80% Identity
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