Pdom030296.1
Basic Information
- Insect
- Polietes domitor
- Gene Symbol
- MBD2
- Assembly
- GCA_947397865.1
- Location
- OX377618.1:55130491-55132187[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.4e-25 5.3e-21 75.8 0.0 1 73 9 76 9 80 0.94 2 2 2.5e-05 0.4 12.1 0.0 27 73 178 233 167 237 0.84
Sequence Information
- Coding Sequence
- ATGCAAATGAACTCGAATATTTCAATAGAACGTAAAAAAATAGATTGCAATGTCTTGCCAAAAGGTTGGCAGAGAGAAGAGATTTTGCGTAAATCTGGAATATCTGCTGGAAAAGTTGATGTCTACTATTATAGTCCTACCGGAAAACGCATTGATAGTAAACCTCAATTAGCCCGACATTTAGGAGACGCCATTGACATAAGCAGTTTTGATTTTCAAAAAGGAAAATTTATACAGCATCTACCAGCACCACCATCAATATCTTTATATCGTTGTTTGCCGGGAACCTCAATTAGTGCTGCTAATGTTGGTGGTTGTAGTGTTGGTGCCAATTTACCAGCTGGTATTACAATAGTACCCCAGACATCGTCGGGGCACTCATTAAAGCGCAAGCATAAATCACCTCTGCAAACTACTACATTGTCTTCTTCTACGACCTCCAGTTATAACCTGTTGAGTTCTTGTACAACGACGTCACCGTCGTCTAATTTACCACCATCCAATCTAAAGCAACAACAGTTAGAATTCAGCCGTGCAATGCGAACAGACGTTTCGCTTGTTCCACCCATACGTCAAACGGCATCAATATTTAAACAGCCAGTTACAGTCGTACGTAATCATGAAAACAACAAGGTGAAACACGATACCAAACAAGGAGCCCAAGACAAACCTAAGCAACTCTTCTGGGAAAAGCGTCTAGAGCACATGCGCGCATGCCATGCTACAGGTGAACAATTCGACGATATAGTTTTGCCTAAAAGTCTTAAGCCATTGGGTCCTAATATCCATGAACAGACAGTTATGCAATCTTTGGCAACAGCATTACACGTACTCAATACACCTGTCACTGGACAAACTGCCACAAAGACTGAATTTCAAAAAAATGCCGCAGCATTCATTAACCCCGACCAGCCGTTAATGCAGGGTATACTCATATCGGAGGATGACATACGACGGCAAGAAGATCGTGTAACTATAGCACGAAGAAAATTACAGGAAGCCTTAAAGGCTTGA
- Protein Sequence
- MQMNSNISIERKKIDCNVLPKGWQREEILRKSGISAGKVDVYYYSPTGKRIDSKPQLARHLGDAIDISSFDFQKGKFIQHLPAPPSISLYRCLPGTSISAANVGGCSVGANLPAGITIVPQTSSGHSLKRKHKSPLQTTTLSSSTTSSYNLLSSCTTTSPSSNLPPSNLKQQQLEFSRAMRTDVSLVPPIRQTASIFKQPVTVVRNHENNKVKHDTKQGAQDKPKQLFWEKRLEHMRACHATGEQFDDIVLPKSLKPLGPNIHEQTVMQSLATALHVLNTPVTGQTATKTEFQKNAAAFINPDQPLMQGILISEDDIRRQEDRVTIARRKLQEALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01019425; iTF_00716707; iTF_00892751; iTF_00371028; iTF_01165526; iTF_00679493; iTF_01175095; iTF_01374951; iTF_00817423; iTF_00816549;
- 90% Identity
- -
- 80% Identity
- -