Phis024164.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- -
- Assembly
- GCA_963924545.1
- Location
- OZ004695.1:64433544-64435576[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.84 6.8e+03 -1.1 0.5 20 43 177 199 171 205 0.73 2 8 3e-05 0.24 13.2 0.0 21 49 297 325 292 330 0.92 3 8 1.5 1.2e+04 -1.9 0.0 24 45 376 397 355 400 0.74 4 8 0.00087 7.1 8.5 0.0 21 44 401 424 395 429 0.91 5 8 0.2 1.6e+03 0.9 0.2 27 45 466 484 461 492 0.89 6 8 0.38 3.1e+03 -0.0 0.0 21 43 488 510 484 516 0.81 7 8 0.011 92 4.9 0.1 11 48 505 543 497 545 0.83 8 8 5.5e-05 0.45 12.3 0.1 21 48 545 572 540 574 0.89
Sequence Information
- Coding Sequence
- atggatctttttaaatatatggaTATCACTGTTAATGACTTTGCCAAAATATGTCGTGTGTGTTTATTACCTAACAACATCCCTTTGGAATCGCTAGAATCAATCAATTTATATGAGAAAGTAACCAAAATTCAGATAAAACAAGACGATATTCTTCCTAAAAGTATATGTAACAGTTGTGCttcaaaactaaaaaatatagcatcttttgtagaaaaatgtaaagaagCAAATACACTCTTAATGACAATCTTAGAACAATCAAAACAAGGCAGTTTTAGTCCTACTCGTGACCCACCAGATTATGAATCAGACATTCCGGACTCTCATTCATGTGATGAAGtaacaataaaattagaaaatgtaaATTCACAGAATGGCTCGGAAACTATCATCAAATCTGaaagagatttaaaaaattctgagattaattttgaaaagtgtaaattaaaaatttttcattgtgcAAATTGTGGAAAAGGATTTCATACTAAACGGGAGTTAGTACTTCATATACGAAGGCATTCACAAAATAAATCTTTTACCTGTTTAACATGCAATACGAAGTTTAAATTCAGACAATCTTTACAGAGACATCAACTAATCCACAGTGTTATAAGAGCACATAAATGTGATATTTGTGGAAAAGGATTCAAGAGAGTCTTTTCAAGGGACAAACATAGAAAGATTCACAGTGAAGTAAAATTGCTTGGAGGTACAGAGTCTCCCAAATATAGTTGCACACAGTGTGATAGAGTCCTGACTTCCCACTCAGCATTAAGCAGTCATATGAAAACCCATACTGGTGAAAAACCGTATTCTTGTACATACTGTGGTAAACGCTTTCCGTATGTTAGTAGCCTAACTGTTCATACTCGCTTGCATAcagGTGAAACTCCATTTATTTGTTCAATATGCAATAAAGGCTATCGTAGTTCAACTAGCCTTAAAAAACACAAGGAAGTTAAACATTATGAAATGGAGGATGTTAAACAAGAACGTGGTGATGACAAAATTGGGGACTCGTCTAATGATTTGGATAAAAGAGAATGTAcgatttgtaataaaatacttCACAAACATGGATTTGGCACCCATATGAGAATTCACACCATTGAAAAGAAGAAATTTGTGTgtacattttgtaataaaaatttccagaaaaacTCTCATCTTGAACGGCATATAAGGATACATACAGGAGAAAGGCCTTATATCTgcaaaatatgcaataaaactTTCAAACAAGATGGAGACCTCAAAAGACATGTTTTAACACACACAGGTGAAAAACAATACCAGTGTCAGCACTGCGGTAAACAATATTATACAAAAGGATCACTAGATACTCACATGAGTGTACATACAGGTATCAGACGACCAGTCAATTATGAGTGCAACATTTGTAAGAAATCGTTCAGACAATGTACTCACTTCAAAACACACATGAATTCACATACTGGGGAAAGGCCGTATTTGTGTACCATCTGTGGCAAGTCCTTCACTGCAAGCGGCACATTAAAAGTACACACTAGAATTCACACAGGTGAAACTCCTTTTGTTTGTTCTTATTGCAACAAAGGGTACAACAATTCGAGTAGCTTGAAACGGCACATTATGAGGAATCATACTGGAGAAAAACCGTATGTGTGTATGATTTGCCATAAAGGGTTTCACGACTCCACTAATTTGAAGAGACATGTAAAACGAGTGCATTCTGTACTAGAGATCAAGAAAGATAACGAAGTTGTAGGGCTGTCTAAATCTGTCTTGATATAA
- Protein Sequence
- MDLFKYMDITVNDFAKICRVCLLPNNIPLESLESINLYEKVTKIQIKQDDILPKSICNSCASKLKNIASFVEKCKEANTLLMTILEQSKQGSFSPTRDPPDYESDIPDSHSCDEVTIKLENVNSQNGSETIIKSERDLKNSEINFEKCKLKIFHCANCGKGFHTKRELVLHIRRHSQNKSFTCLTCNTKFKFRQSLQRHQLIHSVIRAHKCDICGKGFKRVFSRDKHRKIHSEVKLLGGTESPKYSCTQCDRVLTSHSALSSHMKTHTGEKPYSCTYCGKRFPYVSSLTVHTRLHTGETPFICSICNKGYRSSTSLKKHKEVKHYEMEDVKQERGDDKIGDSSNDLDKRECTICNKILHKHGFGTHMRIHTIEKKKFVCTFCNKNFQKNSHLERHIRIHTGERPYICKICNKTFKQDGDLKRHVLTHTGEKQYQCQHCGKQYYTKGSLDTHMSVHTGIRRPVNYECNICKKSFRQCTHFKTHMNSHTGERPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSYCNKGYNNSSSLKRHIMRNHTGEKPYVCMICHKGFHDSTNLKRHVKRVHSVLEIKKDNEVVGLSKSVLI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01227558;
- 90% Identity
- iTF_01227558;
- 80% Identity
- iTF_01227548;