Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004695.1:64433544-64435576[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00018 0.018 17.1 3.5 1 23 153 175 153 175 0.98

2 14 0.00036 0.037 16.1 3.5 1 23 181 203 181 203 0.98

3 14 0.0022 0.23 13.6 3.2 1 23 209 231 209 231 0.97

4 14 2.4e-05 0.0024 19.8 2.1 1 23 245 267 245 267 0.99

5 14 3e-06 0.0003 22.7 1.0 1 23 273 295 273 295 0.98

6 14 7.2e-05 0.0072 18.3 1.4 1 23 301 324 301 324 0.94

7 14 0.36 37 6.6 3.4 2 23 350 370 350 370 0.97

8 14 5.7e-06 0.00058 21.8 3.9 1 23 377 399 377 399 0.98

9 14 9.6e-07 9.8e-05 24.2 0.9 1 23 405 427 405 427 0.98

10 14 1.8e-05 0.0019 20.2 2.6 1 23 433 455 433 455 0.98

11 14 2.8e-05 0.0028 19.6 8.4 1 23 464 486 464 486 0.99

12 14 3.5e-06 0.00035 22.4 0.3 1 23 492 514 492 514 0.96

13 14 8.7e-07 8.8e-05 24.3 1.6 1 23 520 543 520 543 0.97

14 14 4.7e-05 0.0047 18.9 3.8 1 23 549 572 549 572 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00018	0.018	17.1	3.5	1	23	153	175	153	175	0.98
2	14	0.00036	0.037	16.1	3.5	1	23	181	203	181	203	0.98
3	14	0.0022	0.23	13.6	3.2	1	23	209	231	209	231	0.97
4	14	2.4e-05	0.0024	19.8	2.1	1	23	245	267	245	267	0.99
5	14	3e-06	0.0003	22.7	1.0	1	23	273	295	273	295	0.98
6	14	7.2e-05	0.0072	18.3	1.4	1	23	301	324	301	324	0.94
7	14	0.36	37	6.6	3.4	2	23	350	370	350	370	0.97
8	14	5.7e-06	0.00058	21.8	3.9	1	23	377	399	377	399	0.98
9	14	9.6e-07	9.8e-05	24.2	0.9	1	23	405	427	405	427	0.98
10	14	1.8e-05	0.0019	20.2	2.6	1	23	433	455	433	455	0.98
11	14	2.8e-05	0.0028	19.6	8.4	1	23	464	486	464	486	0.99
12	14	3.5e-06	0.00035	22.4	0.3	1	23	492	514	492	514	0.96
13	14	8.7e-07	8.8e-05	24.3	1.6	1	23	520	543	520	543	0.97
14	14	4.7e-05	0.0047	18.9	3.8	1	23	549	572	549	572	0.97

Sequence Information

Coding Sequence: atggatctttttaaatatatggaTATCACTGTTAATGACTTTGCCAAAATATGTCGTGTGTGTTTATTACCTAACAACATCCCTTTGGAATCGCTAGAATCAATCAATTTATATGAGAAAGTAACCAAAATTCAGATAAAACAAGACGATATTCTTCCTAAAAGTATATGTAACAGTTGTGCttcaaaactaaaaaatatagcatcttttgtagaaaaatgtaaagaagCAAATACACTCTTAATGACAATCTTAGAACAATCAAAACAAGGCAGTTTTAGTCCTACTCGTGACCCACCAGATTATGAATCAGACATTCCGGACTCTCATTCATGTGATGAAGtaacaataaaattagaaaatgtaaATTCACAGAATGGCTCGGAAACTATCATCAAATCTGaaagagatttaaaaaattctgagattaattttgaaaagtgtaaattaaaaatttttcattgtgcAAATTGTGGAAAAGGATTTCATACTAAACGGGAGTTAGTACTTCATATACGAAGGCATTCACAAAATAAATCTTTTACCTGTTTAACATGCAATACGAAGTTTAAATTCAGACAATCTTTACAGAGACATCAACTAATCCACAGTGTTATAAGAGCACATAAATGTGATATTTGTGGAAAAGGATTCAAGAGAGTCTTTTCAAGGGACAAACATAGAAAGATTCACAGTGAAGTAAAATTGCTTGGAGGTACAGAGTCTCCCAAATATAGTTGCACACAGTGTGATAGAGTCCTGACTTCCCACTCAGCATTAAGCAGTCATATGAAAACCCATACTGGTGAAAAACCGTATTCTTGTACATACTGTGGTAAACGCTTTCCGTATGTTAGTAGCCTAACTGTTCATACTCGCTTGCATAcagGTGAAACTCCATTTATTTGTTCAATATGCAATAAAGGCTATCGTAGTTCAACTAGCCTTAAAAAACACAAGGAAGTTAAACATTATGAAATGGAGGATGTTAAACAAGAACGTGGTGATGACAAAATTGGGGACTCGTCTAATGATTTGGATAAAAGAGAATGTAcgatttgtaataaaatacttCACAAACATGGATTTGGCACCCATATGAGAATTCACACCATTGAAAAGAAGAAATTTGTGTgtacattttgtaataaaaatttccagaaaaacTCTCATCTTGAACGGCATATAAGGATACATACAGGAGAAAGGCCTTATATCTgcaaaatatgcaataaaactTTCAAACAAGATGGAGACCTCAAAAGACATGTTTTAACACACACAGGTGAAAAACAATACCAGTGTCAGCACTGCGGTAAACAATATTATACAAAAGGATCACTAGATACTCACATGAGTGTACATACAGGTATCAGACGACCAGTCAATTATGAGTGCAACATTTGTAAGAAATCGTTCAGACAATGTACTCACTTCAAAACACACATGAATTCACATACTGGGGAAAGGCCGTATTTGTGTACCATCTGTGGCAAGTCCTTCACTGCAAGCGGCACATTAAAAGTACACACTAGAATTCACACAGGTGAAACTCCTTTTGTTTGTTCTTATTGCAACAAAGGGTACAACAATTCGAGTAGCTTGAAACGGCACATTATGAGGAATCATACTGGAGAAAAACCGTATGTGTGTATGATTTGCCATAAAGGGTTTCACGACTCCACTAATTTGAAGAGACATGTAAAACGAGTGCATTCTGTACTAGAGATCAAGAAAGATAACGAAGTTGTAGGGCTGTCTAAATCTGTCTTGATATAA
Protein Sequence: MDLFKYMDITVNDFAKICRVCLLPNNIPLESLESINLYEKVTKIQIKQDDILPKSICNSCASKLKNIASFVEKCKEANTLLMTILEQSKQGSFSPTRDPPDYESDIPDSHSCDEVTIKLENVNSQNGSETIIKSERDLKNSEINFEKCKLKIFHCANCGKGFHTKRELVLHIRRHSQNKSFTCLTCNTKFKFRQSLQRHQLIHSVIRAHKCDICGKGFKRVFSRDKHRKIHSEVKLLGGTESPKYSCTQCDRVLTSHSALSSHMKTHTGEKPYSCTYCGKRFPYVSSLTVHTRLHTGETPFICSICNKGYRSSTSLKKHKEVKHYEMEDVKQERGDDKIGDSSNDLDKRECTICNKILHKHGFGTHMRIHTIEKKKFVCTFCNKNFQKNSHLERHIRIHTGERPYICKICNKTFKQDGDLKRHVLTHTGEKQYQCQHCGKQYYTKGSLDTHMSVHTGIRRPVNYECNICKKSFRQCTHFKTHMNSHTGERPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSYCNKGYNNSSSLKRHIMRNHTGEKPYVCMICHKGFHDSTNLKRHVKRVHSVLEIKKDNEVVGLSKSVLI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227558;
90% Identity: iTF_01227558;
80% Identity: iTF_01228066;