Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: -
Assembly: GCA_963924545.1
Location: OZ004694.1:76627199-76629530[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00011 0.011 17.8 3.0 1 23 97 119 97 119 0.98

2 14 0.00032 0.033 16.2 3.5 1 23 125 147 125 147 0.98

3 14 0.002 0.2 13.8 3.2 1 23 153 175 153 175 0.97

4 14 2.1e-05 0.0022 20.0 2.1 1 23 189 211 189 211 0.99

5 14 2.6e-06 0.00027 22.8 1.0 1 23 217 239 217 239 0.98

6 14 6.4e-05 0.0065 18.5 1.4 1 23 245 268 245 268 0.94

7 14 0.33 33 6.8 3.4 2 23 295 315 295 315 0.97

8 14 5.1e-06 0.00051 21.9 3.9 1 23 322 344 322 344 0.98

9 14 8.6e-07 8.7e-05 24.3 0.9 1 23 350 372 350 372 0.98

10 14 1.6e-05 0.0017 20.3 2.6 1 23 378 400 378 400 0.98

11 14 2.5e-05 0.0025 19.8 8.4 1 23 409 431 409 431 0.99

12 14 3.1e-06 0.00031 22.6 0.3 1 23 437 459 437 459 0.96

13 14 7.7e-07 7.8e-05 24.5 1.6 1 23 465 488 465 488 0.97

14 14 0.4 41 6.5 0.6 1 12 494 505 494 507 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00011	0.011	17.8	3.0	1	23	97	119	97	119	0.98
2	14	0.00032	0.033	16.2	3.5	1	23	125	147	125	147	0.98
3	14	0.002	0.2	13.8	3.2	1	23	153	175	153	175	0.97
4	14	2.1e-05	0.0022	20.0	2.1	1	23	189	211	189	211	0.99
5	14	2.6e-06	0.00027	22.8	1.0	1	23	217	239	217	239	0.98
6	14	6.4e-05	0.0065	18.5	1.4	1	23	245	268	245	268	0.94
7	14	0.33	33	6.8	3.4	2	23	295	315	295	315	0.97
8	14	5.1e-06	0.00051	21.9	3.9	1	23	322	344	322	344	0.98
9	14	8.6e-07	8.7e-05	24.3	0.9	1	23	350	372	350	372	0.98
10	14	1.6e-05	0.0017	20.3	2.6	1	23	378	400	378	400	0.98
11	14	2.5e-05	0.0025	19.8	8.4	1	23	409	431	409	431	0.99
12	14	3.1e-06	0.00031	22.6	0.3	1	23	437	459	437	459	0.96
13	14	7.7e-07	7.8e-05	24.5	1.6	1	23	465	488	465	488	0.97
14	14	0.4	41	6.5	0.6	1	12	494	505	494	507	0.88

Sequence Information

Coding Sequence: ATGCTTGTCTGCGCttcaaaactaaaaaatatagcatcttttgtagaaaaatgtaaagaagCAAATACACTCTTAATGACAATCTTAGAACAATCAAAACAAGGCAGTTTTAGTCCTACTCGTGACCCACCGGATTATGAATCAGACATTCCAGACTCTCATTCATGTGATGAAGTAacaattaaattagaaaatttaaattcacaGAATGGCTCGGAAACTATCATCAAATCTGaaagagatttaaaaaattctgagattaattttgaaaagtgtaaattaaaaatttttcattgtgcAAATTGTGGAAAAGGATTTCATACTAAACGGGAGTTAGTACTTCACATACGAATGCattcacaaaataaatattttacctgtTTAACATGCAATACGAAGTTTAAATTCAGACAATCGTTACAGAGACATCAACTAATCCACAGTGTTGTAAGAGCACATAAATGTGATATTTGTGGAAAAGGATTCAAGAGAGTCTTTTCAAGGGACAAACATAGAAAGATTCACAGTGAAGTAAAATTGCTTGGAGGTACAGAGTCTCCCAAATATAGTTGCACACAGTGTGATAGAGTCCTGACTTCCCACTCAGCATTAAGCAGTCATATGAAAACCCATACTGGTGAAAAACCGTATTCTTGTACATACTGTGGTAAACGCTTTCCGTATGTTAGTAGCCTAACTGTTCATACTCGCTTGCATAcagGTGAAACTCCATTTATTTGTTCAATATGCAATAAAGGCTATCGTAGTTCAACTAGCCTTAAAAAACACAAGGAAGTTAAACATTATGAAATGGAGGATGTTAAACAAGAAGAACGTGGGGATGACAAAATTGGGGACTCGTCTAATGATTTGGATAAAAGAGAATGTAcgatttgtaataaaatacttCACAAACATGGATTTGGCACCCATATGAGAATTCACACCATTGAAAAGAAGAAATTTGTGTgtacattttgtaataaaaatttccagaaaaacTCTCATCTTGAACGGCATATAAGGATACATACAGGAGAAAGGCCTTATATCTgcaaaatatgcaataaaactTTCAAACAAGATGGAGACCTCAAAAGACATGTTTTAACACACACAGGTGAAAAACAATACCAGTGTCAGCACTGCGGTAAACAATATTATACAAAAGGATCACTAGATACTCACATGAGTGTACATACAGGTATCAGACGACCAGTCAATTATGAGTGCAACATTTGTAAGAAATCGTTCAGACAATGTACTCACTTCAAAACACACATGAATTCACATACTGGGGAAAGGCCGTATTTGTGTACCATCTGTGGCAAGTCCTTCACTGCAAGCGGCACATTAAAAGTACACACTAGAATTCACACAGGTGAAACTCCTTTTGTTTGTTCTTATTGCAACAAAGGGTACAACAATTCGAGTAGCTTGAAGCGGCACATTATGAGGAATCATACTGGAGAAAAACCGTATGTGTGTATGATTTGCCATAAACGGTTTCACGACTCTAGGATATTCCGGAGCCCAACATCAGCTCGTTCCCCATCTTCAAGGCAAATATTGACACAAGGCATATCACTGGATGTAGCAGATAAGCAGCGGTAA
Protein Sequence: MLVCASKLKNIASFVEKCKEANTLLMTILEQSKQGSFSPTRDPPDYESDIPDSHSCDEVTIKLENLNSQNGSETIIKSERDLKNSEINFEKCKLKIFHCANCGKGFHTKRELVLHIRMHSQNKYFTCLTCNTKFKFRQSLQRHQLIHSVVRAHKCDICGKGFKRVFSRDKHRKIHSEVKLLGGTESPKYSCTQCDRVLTSHSALSSHMKTHTGEKPYSCTYCGKRFPYVSSLTVHTRLHTGETPFICSICNKGYRSSTSLKKHKEVKHYEMEDVKQEERGDDKIGDSSNDLDKRECTICNKILHKHGFGTHMRIHTIEKKKFVCTFCNKNFQKNSHLERHIRIHTGERPYICKICNKTFKQDGDLKRHVLTHTGEKQYQCQHCGKQYYTKGSLDTHMSVHTGIRRPVNYECNICKKSFRQCTHFKTHMNSHTGERPYLCTICGKSFTASGTLKVHTRIHTGETPFVCSYCNKGYNNSSSLKRHIMRNHTGEKPYVCMICHKRFHDSRIFRSPTSARSPSSRQILTQGISLDVADKQR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227548; iTF_01228066;
90% Identity: iTF_01227548; iTF_01228066;
80% Identity: -