Basic Information

Insect: Pogonocherus hispidulus
Gene Symbol: ham
Assembly: GCA_963924545.1
Location: OZ004698.1:40447029-40485452[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.086 8.7 8.6 0.4 2 23 114 136 113 136 0.95

2 9 0.00013 0.013 17.5 2.0 1 23 143 166 143 166 0.96

3 9 1.2e-08 1.2e-06 30.2 1.3 1 23 172 195 172 195 0.98

4 9 2.3e-06 0.00023 23.0 1.7 1 23 201 223 201 223 0.95

5 9 5.7e-05 0.0057 18.6 5.0 1 23 229 251 229 251 0.99

6 9 0.0042 0.43 12.7 1.1 2 21 259 278 258 279 0.95

7 9 1.9e-08 2e-06 29.5 0.7 1 23 601 623 601 623 0.98

8 9 2.5e-06 0.00025 22.9 1.6 1 23 629 652 629 652 0.97

9 9 2e-05 0.002 20.1 3.4 1 23 658 680 658 680 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.086	8.7	8.6	0.4	2	23	114	136	113	136	0.95
2	9	0.00013	0.013	17.5	2.0	1	23	143	166	143	166	0.96
3	9	1.2e-08	1.2e-06	30.2	1.3	1	23	172	195	172	195	0.98
4	9	2.3e-06	0.00023	23.0	1.7	1	23	201	223	201	223	0.95
5	9	5.7e-05	0.0057	18.6	5.0	1	23	229	251	229	251	0.99
6	9	0.0042	0.43	12.7	1.1	2	21	259	278	258	279	0.95
7	9	1.9e-08	2e-06	29.5	0.7	1	23	601	623	601	623	0.98
8	9	2.5e-06	0.00025	22.9	1.6	1	23	629	652	629	652	0.97
9	9	2e-05	0.002	20.1	3.4	1	23	658	680	658	680	0.99

Sequence Information

Coding Sequence: atgattttcgcaactccggttGTTGCCGGTTCGGGAGTTAGAGGATGGCTGGATGGCTCAGTGGAACACCAAAACTGGTTGAAACTTATCCAGAGTACTCCAAACAAGAACCAGGCTAATGTTCGACACTACTTGCAGAGCGGGCAGCTGTGGTATGAAACCTTTCAAGACATTCCTTCCGGTACTGAACTGATGTTGAGTCCGAGAGAACCGTTAAACCTTCAGGACATGTTTGGTGACTCCACTTCAGCTGATGAGAGATCTGACAGAGAGACAGCATCACAGCATAGTGGAACGGTTGACGAGCGAGAAGACGACGAAGAAGACGAGTCTGAAATCCGATGTTGCGTGTGCGATCAGGCCTACACCGATGTAGATAAATTAGATGAACATTTAATTTCTAAGCACAATTACCATCGAGACGAATACCGATGCGATTATTGCCCGAAGTCCTACTCCTATCGTCCTTGCCTGATAAGACATCGAGCGATACAGCACGGAGAACATAGAAAATATCATTGTGAAAATTGTCCTAAGgtcTTTACTGATCCAAGCAATCTTCAGAGGCATATCAGAACAAACCACGTTGGTGCACGCTCCCACGCTTGCCCAGAATGTGGAAAAACATTTGCCACCTCCTCCGGATTGAAACAACATACCCACATACACTCCTCTGTGAAACCCTTTCAGTGTGAAGTGTGCTTTAAGGCATACACGCAGTTCTCAAATCTTTGTCGTCACAAACGTATGCACGCCGACTGCCGAATGCAAATCAAGTGCGTTAAGTGTAACCAATCCTTCTCCACGGTGACATCTCTGTCAAAACACAAGCGTTTCTGCGATTCAACGACCCCCACTCCTTCTCTTACAGCACCTTCGCAATTACCTCTGAGCCCAATGGCCAGCAACAACCATTTTTCAATCTACAGGCCCCCTGGATGTCACTTGCCGTTTCCTTTCCCCCCACAGTTTCCTCATTACCCTCAAATGTTTCCGTCTAGTCCAGTGAATTCTTTCATATCCCCACTTTTCTTCAATCACTTACCTAAGCTAAAGACCGACGAAGATCTCTCACCCCCACCACAAAAAAAATTGAGGTTGAGCAGCCCTGAAAGGATATCACCCAAAATAGAGAGGTTTACGCCTCCCAGGGAAACCCCTGTAGTTGCTAAAGTCAGTCCCCCTACTGGATTAGAAGCCAACTTAACGCCATCTCCTGCAAGacctaataatattttatcacaTCCCAGAGAACAAATCACTATTCAGTCATCGGAAGATGAAAACTTTCCTAAGGATTTATCAAAGAGCTCAGACAAGAACTTATCTAGACCTCCTTCCGAGAGTAGCGACGAAGGGGAACAACCTTTAGATCTGAGCGGCTGGAAAAAGTCTGGACTAGTTGCTGAAGTGAAAGTAGAAAAAAATGAAACCAGAAGTAAGTCAGTTTCACCACCGAGTATCGTAAAGGAAGAAAAAATCGAGATAGTCGAAGTggaagaagaaaaaaaaacgTCAATTGTTGAGAAAGTTACTGTTACTCCTCCAATGGCATATCCCAGACCCATACATCCAATTATGTTAGAGAACTTAATGTGTAGGCCTAACTTCCCGTACAATTACCCACAGAACAACGAGAGGTTACTTCCGTCACCATTCGGACATCACAGATTTTCTTTTTTAAGCGCCCTACCTCCACAGAGGCTGGATTTGCTAAGACCAGGATTACAGAGTTTTAACAACGGAAAACCTTACCACGAAGTAATGCAGCAGCAAAGCCAAGGAAAAATCAAGGACAGGTATGCTTGCAAATTTTGCGGGAAAGTGTTCCCACGATCAGCAAACCTAACCAGGCATCTGCGTACTCATACTGGGGAGCAGCCTTATAAATGTAGATACTGTGAACGTTCCTTCAGCATATCCAGTAATCTTCAAAGACACGTCAGAAATATTCACAATAAGGAAAAGCCATTTAAGTGCCCACTGTGTGAAAGATGTTTTGGACAGCAGACTAATTTGGACAGGCATCTTAAGAAGCATGAGTCTGACGATGGAAATGGTGGAGTGGCAGTTGCAGACTCGCCTGGAAGCAGCAATGAAAATGAACGCGAAGACGCTCGTTTTGATGAAATAAGAACGTTTATGGAAAAAGTGACCTATAGTGGACAAGAGTACTACAATGTTACTACGAGATTGTACAACCCTTCACCAAGTCACGAAATTGACGTGGTTGGAAAGGAAGATGAAGATTCTGAAACATACTCCGAAATTGCTGAAGATTTCCCCTCAACCCATAAGAACAACTTTGATTCGAAGATGAAACAGGAAAAAGAAGAACTGTTAAATAACAATGATCAGACTATTAAGGTTTCTACTTAG
Protein Sequence: MIFATPVVAGSGVRGWLDGSVEHQNWLKLIQSTPNKNQANVRHYLQSGQLWYETFQDIPSGTELMLSPREPLNLQDMFGDSTSADERSDRETASQHSGTVDEREDDEEDESEIRCCVCDQAYTDVDKLDEHLISKHNYHRDEYRCDYCPKSYSYRPCLIRHRAIQHGEHRKYHCENCPKVFTDPSNLQRHIRTNHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCNQSFSTVTSLSKHKRFCDSTTPTPSLTAPSQLPLSPMASNNHFSIYRPPGCHLPFPFPPQFPHYPQMFPSSPVNSFISPLFFNHLPKLKTDEDLSPPPQKKLRLSSPERISPKIERFTPPRETPVVAKVSPPTGLEANLTPSPARPNNILSHPREQITIQSSEDENFPKDLSKSSDKNLSRPPSESSDEGEQPLDLSGWKKSGLVAEVKVEKNETRSKSVSPPSIVKEEKIEIVEVEEEKKTSIVEKVTVTPPMAYPRPIHPIMLENLMCRPNFPYNYPQNNERLLPSPFGHHRFSFLSALPPQRLDLLRPGLQSFNNGKPYHEVMQQQSQGKIKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHESDDGNGGVAVADSPGSSNENEREDARFDEIRTFMEKVTYSGQEYYNVTTRLYNPSPSHEIDVVGKEDEDSETYSEIAEDFPSTHKNNFDSKMKQEKEELLNNNDQTIKVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227523; iTF_01296737; iTF_00110801; iTF_01014897; iTF_01310785; iTF_01290640; iTF_00166292; iTF_00166247; iTF_01370108; iTF_00886739;
90% Identity: iTF_01014897;
80% Identity: iTF_01227523;