Phis039739.1
Basic Information
- Insect
- Pogonocherus hispidulus
- Gene Symbol
- ham
- Assembly
- GCA_963924545.1
- Location
- OZ004698.1:40447029-40485452[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.067 65 5.3 0.0 11 44 107 137 101 137 0.90 2 8 0.019 18 7.1 0.4 18 38 144 161 140 167 0.89 3 8 0.0066 6.4 8.5 1.2 14 43 169 195 164 196 0.88 4 8 0.6 5.8e+02 2.2 0.1 19 38 203 219 200 223 0.87 5 8 3.8 3.7e+03 -0.3 3.5 4 38 217 247 214 252 0.78 6 8 8.2e-05 0.079 14.6 0.1 18 41 602 622 594 624 0.87 7 8 5.5e-05 0.053 15.2 2.2 17 44 629 653 622 653 0.88 8 8 1.1 1.1e+03 1.4 1.4 14 41 655 679 651 680 0.82
Sequence Information
- Coding Sequence
- atgattttcgcaactccggttGTTGCCGGTTCGGGAGTTAGAGGATGGCTGGATGGCTCAGTGGAACACCAAAACTGGTTGAAACTTATCCAGAGTACTCCAAACAAGAACCAGGCTAATGTTCGACACTACTTGCAGAGCGGGCAGCTGTGGTATGAAACCTTTCAAGACATTCCTTCCGGTACTGAACTGATGTTGAGTCCGAGAGAACCGTTAAACCTTCAGGACATGTTTGGTGACTCCACTTCAGCTGATGAGAGATCTGACAGAGAGACAGCATCACAGCATAGTGGAACGGTTGACGAGCGAGAAGACGACGAAGAAGACGAGTCTGAAATCCGATGTTGCGTGTGCGATCAGGCCTACACCGATGTAGATAAATTAGATGAACATTTAATTTCTAAGCACAATTACCATCGAGACGAATACCGATGCGATTATTGCCCGAAGTCCTACTCCTATCGTCCTTGCCTGATAAGACATCGAGCGATACAGCACGGAGAACATAGAAAATATCATTGTGAAAATTGTCCTAAGgtcTTTACTGATCCAAGCAATCTTCAGAGGCATATCAGAACAAACCACGTTGGTGCACGCTCCCACGCTTGCCCAGAATGTGGAAAAACATTTGCCACCTCCTCCGGATTGAAACAACATACCCACATACACTCCTCTGTGAAACCCTTTCAGTGTGAAGTGTGCTTTAAGGCATACACGCAGTTCTCAAATCTTTGTCGTCACAAACGTATGCACGCCGACTGCCGAATGCAAATCAAGTGCGTTAAGTGTAACCAATCCTTCTCCACGGTGACATCTCTGTCAAAACACAAGCGTTTCTGCGATTCAACGACCCCCACTCCTTCTCTTACAGCACCTTCGCAATTACCTCTGAGCCCAATGGCCAGCAACAACCATTTTTCAATCTACAGGCCCCCTGGATGTCACTTGCCGTTTCCTTTCCCCCCACAGTTTCCTCATTACCCTCAAATGTTTCCGTCTAGTCCAGTGAATTCTTTCATATCCCCACTTTTCTTCAATCACTTACCTAAGCTAAAGACCGACGAAGATCTCTCACCCCCACCACAAAAAAAATTGAGGTTGAGCAGCCCTGAAAGGATATCACCCAAAATAGAGAGGTTTACGCCTCCCAGGGAAACCCCTGTAGTTGCTAAAGTCAGTCCCCCTACTGGATTAGAAGCCAACTTAACGCCATCTCCTGCAAGacctaataatattttatcacaTCCCAGAGAACAAATCACTATTCAGTCATCGGAAGATGAAAACTTTCCTAAGGATTTATCAAAGAGCTCAGACAAGAACTTATCTAGACCTCCTTCCGAGAGTAGCGACGAAGGGGAACAACCTTTAGATCTGAGCGGCTGGAAAAAGTCTGGACTAGTTGCTGAAGTGAAAGTAGAAAAAAATGAAACCAGAAGTAAGTCAGTTTCACCACCGAGTATCGTAAAGGAAGAAAAAATCGAGATAGTCGAAGTggaagaagaaaaaaaaacgTCAATTGTTGAGAAAGTTACTGTTACTCCTCCAATGGCATATCCCAGACCCATACATCCAATTATGTTAGAGAACTTAATGTGTAGGCCTAACTTCCCGTACAATTACCCACAGAACAACGAGAGGTTACTTCCGTCACCATTCGGACATCACAGATTTTCTTTTTTAAGCGCCCTACCTCCACAGAGGCTGGATTTGCTAAGACCAGGATTACAGAGTTTTAACAACGGAAAACCTTACCACGAAGTAATGCAGCAGCAAAGCCAAGGAAAAATCAAGGACAGGTATGCTTGCAAATTTTGCGGGAAAGTGTTCCCACGATCAGCAAACCTAACCAGGCATCTGCGTACTCATACTGGGGAGCAGCCTTATAAATGTAGATACTGTGAACGTTCCTTCAGCATATCCAGTAATCTTCAAAGACACGTCAGAAATATTCACAATAAGGAAAAGCCATTTAAGTGCCCACTGTGTGAAAGATGTTTTGGACAGCAGACTAATTTGGACAGGCATCTTAAGAAGCATGAGTCTGACGATGGAAATGGTGGAGTGGCAGTTGCAGACTCGCCTGGAAGCAGCAATGAAAATGAACGCGAAGACGCTCGTTTTGATGAAATAAGAACGTTTATGGAAAAAGTGACCTATAGTGGACAAGAGTACTACAATGTTACTACGAGATTGTACAACCCTTCACCAAGTCACGAAATTGACGTGGTTGGAAAGGAAGATGAAGATTCTGAAACATACTCCGAAATTGCTGAAGATTTCCCCTCAACCCATAAGAACAACTTTGATTCGAAGATGAAACAGGAAAAAGAAGAACTGTTAAATAACAATGATCAGACTATTAAGGTTTCTACTTAG
- Protein Sequence
- MIFATPVVAGSGVRGWLDGSVEHQNWLKLIQSTPNKNQANVRHYLQSGQLWYETFQDIPSGTELMLSPREPLNLQDMFGDSTSADERSDRETASQHSGTVDEREDDEEDESEIRCCVCDQAYTDVDKLDEHLISKHNYHRDEYRCDYCPKSYSYRPCLIRHRAIQHGEHRKYHCENCPKVFTDPSNLQRHIRTNHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCNQSFSTVTSLSKHKRFCDSTTPTPSLTAPSQLPLSPMASNNHFSIYRPPGCHLPFPFPPQFPHYPQMFPSSPVNSFISPLFFNHLPKLKTDEDLSPPPQKKLRLSSPERISPKIERFTPPRETPVVAKVSPPTGLEANLTPSPARPNNILSHPREQITIQSSEDENFPKDLSKSSDKNLSRPPSESSDEGEQPLDLSGWKKSGLVAEVKVEKNETRSKSVSPPSIVKEEKIEIVEVEEEKKTSIVEKVTVTPPMAYPRPIHPIMLENLMCRPNFPYNYPQNNERLLPSPFGHHRFSFLSALPPQRLDLLRPGLQSFNNGKPYHEVMQQQSQGKIKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHESDDGNGGVAVADSPGSSNENEREDARFDEIRTFMEKVTYSGQEYYNVTTRLYNPSPSHEIDVVGKEDEDSETYSEIAEDFPSTHKNNFDSKMKQEKEELLNNNDQTIKVST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01227591;
- 90% Identity
- iTF_01014897;
- 80% Identity
- iTF_01227591;