Basic Information

Insect: Aromia moschata
Gene Symbol: ham
Assembly: GCA_029963805.1
Location: JAPWTK010000012.1:3212597-3228739[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.4 1.9e+02 3.6 1.7 2 20 32 50 31 54 0.92

2 9 0.00025 0.019 16.2 1.6 1 23 61 84 61 84 0.96

3 9 9.6e-09 7.3e-07 30.1 3.1 1 23 90 112 90 113 0.96

4 9 1.4e-06 0.00011 23.2 1.7 1 23 119 141 119 141 0.95

5 9 3.6e-05 0.0028 18.8 5.0 1 23 147 169 147 169 0.99

6 9 0.00038 0.029 15.6 0.7 2 21 177 196 176 197 0.95

7 9 1.2e-08 9.5e-07 29.7 0.7 1 23 513 535 513 535 0.98

8 9 1.6e-06 0.00012 23.1 1.6 1 23 541 564 541 564 0.97

9 9 1.3e-05 0.00096 20.3 3.4 1 23 570 592 570 592 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.4	1.9e+02	3.6	1.7	2	20	32	50	31	54	0.92
2	9	0.00025	0.019	16.2	1.6	1	23	61	84	61	84	0.96
3	9	9.6e-09	7.3e-07	30.1	3.1	1	23	90	112	90	113	0.96
4	9	1.4e-06	0.00011	23.2	1.7	1	23	119	141	119	141	0.95
5	9	3.6e-05	0.0028	18.8	5.0	1	23	147	169	147	169	0.99
6	9	0.00038	0.029	15.6	0.7	2	21	177	196	176	197	0.95
7	9	1.2e-08	9.5e-07	29.7	0.7	1	23	513	535	513	535	0.98
8	9	1.6e-06	0.00012	23.1	1.6	1	23	541	564	541	564	0.97
9	9	1.3e-05	0.00096	20.3	3.4	1	23	570	592	570	592	0.99

Sequence Information

Coding Sequence: ATGTGTTTGTATCGGGGCTGCGAGGGAGAGGCGTCCCAGCACAGCGGAACAGTCGACGAACGGGAAGATGACGAAGAGGACGACTCCGAAATACGATGTTGCGTGTGCGATCAAGCCTATAACGATGTAGATAAGTTGGACGATCATTTAATCTGTAAGCACAATTATCGCCGAGACGAATTTAGATGTGACTATTGCCCCAAAGCTTATTCCTATCGACCCTGCTTAATCAAACACAGAGCTGTGCAACACGGCGAACACAAGAAGTACCACTGTGAAAACTGTCCCAAGgtgttCACTGATCCCAGCAATCTTCAGAGACACATTAGAACCCACCACGTGGGAGCACGCTCCCACGCTTGTCCAGAGTGTGGAAAAACATTTGCGACCTCGTCAGGTCTGAAGCAACACACCCACATTCACTCTTCTGTGAAACCCTTTCAGTGTGAAGTCTGTTTTAAGGCTTACACGCAGTTTTCCAACCTTTGTCGACACAAGAGAATGCACGCTGATTGCCGCATGCAAATAAAGTGCGGTAAGTGCGGCCAGTCCTTCTCAACGGTGACGTCTCTCTCTAAACACAAACGTTTCTGCGACTCTACCACCCCCACTCCTTCTCTATCCACCACCTCCCAATTATCTTTAAGTCCTATGGCCACCAACAATCCGTTTTCAATTTACAGGCCGCCAGGTTGTCCACTTCCTTTTCCATTTCCACCTCAATTTCCTCCTTACCACCAGATGTTCCCTTCGACTCCGGTCAATTCGCTCATATcccctttattttttaatcaactGCACAAACTGAAAGCGGAAGAGGAACACATGCCGCTGAAGAAAATGAGGTTGAGTCCCGAGAGAATGTCGCCGAAGAGGGAGCGTTTTACGCCTCCTCGAGAGCCATCTGTCGTGGCCAAAGTAAGCCCCCCCACAGCCGCAGAAGCCCATTTGACCCCGTCACCAGCAAGGCCAAACACAATACTTTCTCATCCAAGAGAACAAATCACCATGCAGTCGCCTGAAGAGGAGCACATTCCTAAAGATTTATCGAAGGCTCCAGAGAAGAGTTCCTCCAGACCGTCGTCAGCTAGTAGCGAGGAAGGTGAGAAGCCTCTAGATCTGAGCGGTTGGAAAAAGTCCAGATTAACTCCGGAGACTAAAATTCAAAACGTCGAGAACCGGAGAAGGTCAGCAACTCCACCCAGTTCGCTGAAGGAAGAGAAAATTGACGTAGTGGAGGtcgaggaggaaaaaaaaacttgcgtCGAAAAGGTGTCCGTTACGCCTCCCATGGCATATCCTAGACCGATTCACCCGATGATGCTGGAAATGCGGAATTTCTCATACAACTACCAGACGCACCAGAATAGTGAATCGCTGCTTCCGCCTCCTTTTGGTCACCACCGATTTCCATTCTTGAACGCCTTGCCTCCCCAAAGGCTGGATCTGTTCAGACCCGGGATGCAAGGATTCAGCAGTATCAAACCCTTTCACGACGTGATCCCGCAGCAAAGTCAAGGAAAAATCAAGGATAGATACGCGTGCAAATTCTGCGGAAAAGTTTTTCCCAGATCGGCGAATCTGACCAGACACCTGAGGACCCACACGGGAGAGCAACCCTACAAGTGTCGATATTGCGAGCGATCATTCAGTATCTCGAGTAATTTGCAGAGGCACGTGAGGAACATTCATAACAAAGAAAAACCCTTCAAATGTCCCCTGTGTGAGAGGTGTTTTGGCCAGCAGACCAACTTGGACAGACACCTGAAGAAACACGAGTCTGACGATGGAAACGGCGGGGTCGCAGTAGCCGACTCGCCAGGAAGCAGCAACGAAAACGAAAGGGAAGACGCCTGCTTCGATGAGATAAGGACGTTCATGGGAAAAGTCACCTATGGGGGACAAGACTACTATAATCCGACCACGCTCTATGCTTCGCCAACGAATCACGATATTGACGTAGTAGGAAAGGAAGATGACGATTCGGAGAGCTTTTCAGAGACAGCTGAAGATTACACCAACAACAGGTCGGACTTTGAGTCGAAAATAAAGCAGGAGAAAGAAGAGTTGTTGAATAACAACGACCAGACTATAAAAGTTTCGACttag
Protein Sequence: MCLYRGCEGEASQHSGTVDEREDDEEDDSEIRCCVCDQAYNDVDKLDDHLICKHNYRRDEFRCDYCPKAYSYRPCLIKHRAVQHGEHKKYHCENCPKVFTDPSNLQRHIRTHHVGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCGKCGQSFSTVTSLSKHKRFCDSTTPTPSLSTTSQLSLSPMATNNPFSIYRPPGCPLPFPFPPQFPPYHQMFPSTPVNSLISPLFFNQLHKLKAEEEHMPLKKMRLSPERMSPKRERFTPPREPSVVAKVSPPTAAEAHLTPSPARPNTILSHPREQITMQSPEEEHIPKDLSKAPEKSSSRPSSASSEEGEKPLDLSGWKKSRLTPETKIQNVENRRRSATPPSSLKEEKIDVVEVEEEKKTCVEKVSVTPPMAYPRPIHPMMLEMRNFSYNYQTHQNSESLLPPPFGHHRFPFLNALPPQRLDLFRPGMQGFSSIKPFHDVIPQQSQGKIKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCERCFGQQTNLDRHLKKHESDDGNGGVAVADSPGSSNENEREDACFDEIRTFMGKVTYGGQDYYNPTTLYASPTNHDIDVVGKEDDDSESFSETAEDYTNNRSDFESKIKQEKEELLNNNDQTIKVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01227591;
90% Identity: iTF_00166247;
80% Identity: iTF_00166247;