Pcup021009.1
Basic Information
- Insect
- Poecilus cupreus
- Gene Symbol
- -
- Assembly
- GCA_963942605.1
- Location
- OZ012718.1:22510900-22513584[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.72 1.4e+02 4.8 0.0 3 20 35 52 34 54 0.93 2 14 4.3 8.3e+02 2.4 0.1 1 12 165 176 165 179 0.91 3 14 0.43 82 5.5 1.2 2 20 326 344 325 346 0.93 4 14 2.2e-06 0.00043 22.1 5.2 1 23 353 375 353 375 0.99 5 14 2.3e-06 0.00044 22.1 0.6 1 23 391 413 391 413 0.98 6 14 0.0096 1.8 10.7 0.5 1 23 443 464 443 464 0.83 7 14 3.2e-06 0.00061 21.6 3.1 1 23 470 492 470 492 0.98 8 14 0.0022 0.41 12.7 4.7 3 23 500 520 498 520 0.95 9 14 0.00025 0.048 15.7 2.7 1 23 526 548 526 548 0.99 10 14 7.9e-07 0.00015 23.6 4.2 1 23 554 576 554 576 0.98 11 14 0.0016 0.31 13.2 6.7 1 23 582 604 582 604 0.98 12 14 2.5e-05 0.0048 18.8 0.2 1 23 610 632 610 632 0.98 13 14 2.2e-05 0.0042 19.0 0.1 1 23 636 658 636 658 0.98 14 14 0.00069 0.13 14.3 0.1 1 23 666 689 666 689 0.96
Sequence Information
- Coding Sequence
- ATGGGCTCATTACAATTGGATTGCCCATTATGTTGTACAGAGACGTTTACATGTTTACAATcacttaaatatcatttattaagTATAATTGACAATATTTTGTGTCCATCGTGTGGATCTCGTTTTTCAACAATACTTGAATTGGCCGATCACTTGGACAACGAATGTGGCAAAACATCTGAAAAAAGCGCGGCAGATTCAGAATCCAGTAGAAATATTccgataaatattaaaatagaaaatgaGGATTCCAGTGACGaaactttaaataatagtatactgGCCAAAGCACTATTAAGTCCACAAAGTGCAACTAAAAATGctatatttattcaaacaaaTGCAAATGGAGAAGCAACAATTGAAGAAAGTTCCGATCATATTTTTTCATCAGGAGAAAATAACGAAGAAACAATGGAAATGGAAAATGATGATACAGTTCCAGAAGAAGGTGGCGAAGAGGACGAAACACAGGAAGAAAGTCAAGAAGTTTATTCTTGCCTCAGCTGTGGTATGAATTTCACTTCGATAGTAGATCATATTCAAGAATACCATGAAGGCGAAGAAGTTGTAGTTGAGATGACGGAAGAAAACCAAGATTCATCCAAAGATGGAAGTGacatcttaaaaaatatatcagaaggAGCTGCCATAATCTCTGAAGAGGGCGTCGAACTCAGCAACTTTGATGATGAAGAAGACATGGGAAGCAACGGAAGTCAAGACGTCCTCGAAGTCGGTAGTCGAGGTCGCATGCCTCAAATCCTTAACACCATCAAACAAGAAGACTGCATCGATAAGGATGGCCGACTTTACACCCGAAAAGTTGTacaaatagaaaaattctgGGATGATAACAGTACGATGAAACGCATGCCAATCGTATTAAAATACATCTACGACTCCGATGGAACTTTAACCAAATATGATTCCGGAGACGAAGTCGCAGACGGAACTCAGATTATAGAAATAAACCAGTGTACAAGCTGCAATGTCCAGTTTTCAAAACGGGAACAATTCGACGCTCATGTCTGCGAGCCAGAAATCGGGAGCGAATATAAATGCTCAATGTGCGATAGAAGTTTCACAAACTCCCAGACGCTGTGCTCGCACATGAAATCCCacaaaaaaatcaaaaccgaAGTAATAGACGCTCCTCCAACGGGTCCTTTCGTCTGCAATGTCTGCGACACTGTCTTCCCGAGCAATAAATCCCTCCGACTGCATCGGCGCATGCACGATCCCATCAAAGCGAAAGAAATAGACGCTCCCGTGGAGTACGGAATCACCGGAAGCGAAACCGGCGAAAATAAAGTCCGGGAGATGTTCGAATGCAAAGTATGTGGCAAGAGCTACGACAAAAGCTACGAGGAAATCCATATGGCGTATCACAGCGGCGTTAACCACTACGATTGCTACATCTGTAACCGCAAGTTCTACACTCACAGCAATTTAGAAATGCATATGAGGGTGCATGGCAGCGAAAAGGGCCACCTTTGCTCTCACTGCAAGAAGGGATTCATGACGGAGGAGAGTCTTCAGCAGCACTTGAAGCAGCACTGCAGCAGCAGGCCTTACCAGTGCAGCTACTGCTCTCGGAGGTTCGCACGCCCCCACGAGAAAGTCAAGCACGAAAGAATACATACTGGGGAGAAACCCCATGAATGCGAAATTTGCGGGAAAACATTCCGAGTTAGTTATTGCTTAACCCTCCACATGCGGACGCACTCTGGTTACAGGCCTTACGTTTGCCAACACTGCGGAAAACGGTTTAAGGCACATAGTGTGTACAACCATCACTTGCTGACTCATTCAGACGTCAGAGGGTATAAATGTCCATATTGTCCCAAAGCTTTCAAAACTGGCGTCCAATTGGCAGGACACAAAAACAGCCACACTAAACCATTTAGTTGCACTGAATGTAATCGTCCGTTCGCGAGTTTATACGCAGTTAGAGCCCATATGGAGACACACAAAAGGGAaaataaccttaaatataattgttaccTCTGCGGTGCATCGTACGCAAGAGCTTTTGCACTTCGAGATCACATTAAAGAAGTTCATGTAGACGCTCCTCAAAATGGGAACATTGCGTTGGATATCATCGAGGAGGGAATGGAAGCTTCCACGTCCATTTTACCGGACAACGATGATATCTCGATGGTGACACTGGAAATGTCAGAAAATGTTTCTGAAATAGAAGACGAAGTCAGTAGACAGTAA
- Protein Sequence
- MGSLQLDCPLCCTETFTCLQSLKYHLLSIIDNILCPSCGSRFSTILELADHLDNECGKTSEKSAADSESSRNIPINIKIENEDSSDETLNNSILAKALLSPQSATKNAIFIQTNANGEATIEESSDHIFSSGENNEETMEMENDDTVPEEGGEEDETQEESQEVYSCLSCGMNFTSIVDHIQEYHEGEEVVVEMTEENQDSSKDGSDILKNISEGAAIISEEGVELSNFDDEEDMGSNGSQDVLEVGSRGRMPQILNTIKQEDCIDKDGRLYTRKVVQIEKFWDDNSTMKRMPIVLKYIYDSDGTLTKYDSGDEVADGTQIIEINQCTSCNVQFSKREQFDAHVCEPEIGSEYKCSMCDRSFTNSQTLCSHMKSHKKIKTEVIDAPPTGPFVCNVCDTVFPSNKSLRLHRRMHDPIKAKEIDAPVEYGITGSETGENKVREMFECKVCGKSYDKSYEEIHMAYHSGVNHYDCYICNRKFYTHSNLEMHMRVHGSEKGHLCSHCKKGFMTEESLQQHLKQHCSSRPYQCSYCSRRFARPHEKVKHERIHTGEKPHECEICGKTFRVSYCLTLHMRTHSGYRPYVCQHCGKRFKAHSVYNHHLLTHSDVRGYKCPYCPKAFKTGVQLAGHKNSHTKPFSCTECNRPFASLYAVRAHMETHKRENNLKYNCYLCGASYARAFALRDHIKEVHVDAPQNGNIALDIIEEGMEASTSILPDNDDISMVTLEMSENVSEIEDEVSRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470212; iTF_00767464; iTF_00769045; iTF_01104984; iTF_00029557; iTF_01275615;
- 90% Identity
- iTF_01275615;
- 80% Identity
- -