Basic Information

Insect: Pterostichus niger
Gene Symbol: -
Assembly: GCA_947425015.1
Location: OX380338.1:3740018-3742422[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.93 1.3e+02 4.8 0.0 3 20 35 52 34 54 0.93

2 14 5.6 8e+02 2.4 0.1 1 12 166 177 166 180 0.91

3 14 1.8 2.5e+02 3.9 1.3 1 20 326 345 326 347 0.90

4 14 9e-05 0.013 17.4 4.6 1 23 354 376 354 376 0.99

5 14 5.3e-06 0.00075 21.3 0.6 1 23 392 414 392 414 0.98

6 14 0.047 6.6 8.9 0.5 1 23 444 465 444 465 0.83

7 14 4.2e-06 0.00059 21.6 3.1 1 23 471 493 471 493 0.98

8 14 0.0028 0.4 12.7 4.7 3 23 501 521 499 521 0.95

9 14 0.00033 0.046 15.7 2.7 1 23 527 549 527 549 0.99

10 14 1e-06 0.00014 23.6 4.2 1 23 555 577 555 577 0.98

11 14 0.0021 0.29 13.2 6.7 1 23 583 605 583 605 0.98

12 14 3.3e-05 0.0046 18.8 0.2 1 23 611 633 611 633 0.98

13 14 2.9e-05 0.004 19.0 0.1 1 23 637 659 637 659 0.98

14 14 0.00089 0.13 14.3 0.1 1 23 667 690 667 690 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.93	1.3e+02	4.8	0.0	3	20	35	52	34	54	0.93
2	14	5.6	8e+02	2.4	0.1	1	12	166	177	166	180	0.91
3	14	1.8	2.5e+02	3.9	1.3	1	20	326	345	326	347	0.90
4	14	9e-05	0.013	17.4	4.6	1	23	354	376	354	376	0.99
5	14	5.3e-06	0.00075	21.3	0.6	1	23	392	414	392	414	0.98
6	14	0.047	6.6	8.9	0.5	1	23	444	465	444	465	0.83
7	14	4.2e-06	0.00059	21.6	3.1	1	23	471	493	471	493	0.98
8	14	0.0028	0.4	12.7	4.7	3	23	501	521	499	521	0.95
9	14	0.00033	0.046	15.7	2.7	1	23	527	549	527	549	0.99
10	14	1e-06	0.00014	23.6	4.2	1	23	555	577	555	577	0.98
11	14	0.0021	0.29	13.2	6.7	1	23	583	605	583	605	0.98
12	14	3.3e-05	0.0046	18.8	0.2	1	23	611	633	611	633	0.98
13	14	2.9e-05	0.004	19.0	0.1	1	23	637	659	637	659	0.98
14	14	0.00089	0.13	14.3	0.1	1	23	667	690	667	690	0.96

Sequence Information

Coding Sequence: ATGGGTTCGCTACAATTGGATTGCCCATTATGTTGTACAGAGACATTTACATGTTTACAATCACTTAAATATCATTTATTAAGCATAATTGACAATATTTTATGTCCATCGTGCGGGTCTCGGTTTTCAACAATACTTGAATTAGCCGATCACTTGGACAACGAATGTGGCAAAACAAGTGAAGAAAGCGCGGCAGATTCAGAATCCAGATCAAATATTCCAATTAATATTAAAATAGAGAATGAAGATTCCAATGAAGAAGTTTTAAATAGTAGCATATTGGCCAAAGCACTATTAAGTCCTCAAGGTGGAACTAAAAATGCAGTTTTTATTAAAACTGATGCAAATGAAGAAACAACAATTGATGAAGGATCCGGCGATATTTATTCTGTAACAGAAAATAACGAAGAAGAGATGGAAATGGAAAATGAAGGTGATGTAGTTGAAGAAGATACTGTTGTAGAAGAGGACACACAGGAAGATTCTCAAGAGGTTTACTCCTGTCTTAGTTGTGGCATGAATTTCACATCAATTGTTGATCATATTCAAGAATATCATGAAGGCGAAGAGGTTGTTGTCGAGATGACAGATGAAAATCAAGATTCATCCAAAGACGGAAGCGATATTTTAAAAAATATATCCGAAGGAGCTGCCATAATTTCCGAAGAAGGTGTCGTACTCAGCAACTTTGAAGATGAGGAAGACATGGGAAGCAATGGAAGTCAAGACATTCTTGAAGTTAGCGGTCGAGGCCGGATGCCCCAAATCCTTAACACCATTAAACAAGAAGACTGCATCGATAAAGATGGTCGACTTTATACTCGCAAAGTTGTACAGATAGAGAAGTTCTGGGACGATAACAGCACAATGAAACGAATGCCAATCGTTTTAAAATACATTTACGAAAATGACGGAACTTTAACCAAATATGAGTCCGGAGATGATGTCGCCGAAGGAACTCAAATTATGCAAATATTCCAGTGTACCAGCTGCAACGTTCAATTTCCAAAAAGGGAACAATTTGACGGCCATGTTTGTGATCCAGAAATCGGAAGCGAATATAAATGCTCAATGTGCGAAAGCAGTTTCACAAATTCTCAATCGCTATGCTCTCACATGAAATCGCACAAGAAAATTAAAACAGAAGTAGTAGATGCTCCACCCACTGGACCTTTTATCTGTAATGTTTGCGACACTGTCTTCCCAAGCAACAAATCACTTCGACTACATCGACGAATGCATGATCCAATCAAAGCAAAAGAAATCGACGCTCCAGTTGAATATGGTCTTACAGGAAATGAAACAAATGAAAATAAAGTCCGAGAAATGTTCGAATGTAAAGTCTGTGGTAAGAATTACGACAAAAGTTACGAAGAGATTCACATGGCTTACCACAGCGGTGTCAACCATTACGATTGTTACATCTGTAACCGAAAGTTTTACACTCACAGTAACTTAGAAATGCATATGAGGGTTCATGGCAGTGAAAAAGGCCATCTTTGCAGTCACTGCAAGAAAGGATTCATGACTGAAGAGAGTCTTCAGCAACACTTGAAGCAACACTGCAGCAGCAGAccttaccagtgcagttactgctctcggagatttgctcgtcctcacgaaaaagtcaaacatgaaagaattcacacaggtgaaaaacctcacgaatgtgaaatttgtggtaaaacattccgcgttagttattgtttaactcttcatatgcggacccattctggatacagaccttacgtttgtcagcactgtggcaaGCGGTTTAAAGCTCATAGCGTGTACAACCATCATTTATTGACACATTCTGATGTTAGAGGATATAAATGTCCGTATTGTCCAAAAGCTTTCAAGACTGGTGTTCAATTAGCCGGACACAAAAATAGTCACACAAAACCATTTAGTTGTACTGAATGTAATCGTCCTTTCGCGAGTTTATACGCGGTAAGAGCTCATATGGAAACCCACAAACGAGAAAATAATCTCAAGTATAATTGTTACTTGTGTGGTGCATCTTATGCAAGAGCTTTTGCATTAAGAGACCATATTAAAGAAGTACATGTGGATGCTCCTCAAAATGGTAACATTGCGCTGGACATCATCGAAGAGGGAATGGAAGCTTCCACATCCATTTTACCGGATAATGATGATATCTCTATGGTAACATTGGAAATGTCCGAAAATGTTTCCGAAATGGATGACGAAGTCAGTGGACAATGA
Protein Sequence: MGSLQLDCPLCCTETFTCLQSLKYHLLSIIDNILCPSCGSRFSTILELADHLDNECGKTSEESAADSESRSNIPINIKIENEDSNEEVLNSSILAKALLSPQGGTKNAVFIKTDANEETTIDEGSGDIYSVTENNEEEMEMENEGDVVEEDTVVEEDTQEDSQEVYSCLSCGMNFTSIVDHIQEYHEGEEVVVEMTDENQDSSKDGSDILKNISEGAAIISEEGVVLSNFEDEEDMGSNGSQDILEVSGRGRMPQILNTIKQEDCIDKDGRLYTRKVVQIEKFWDDNSTMKRMPIVLKYIYENDGTLTKYESGDDVAEGTQIMQIFQCTSCNVQFPKREQFDGHVCDPEIGSEYKCSMCESSFTNSQSLCSHMKSHKKIKTEVVDAPPTGPFICNVCDTVFPSNKSLRLHRRMHDPIKAKEIDAPVEYGLTGNETNENKVREMFECKVCGKNYDKSYEEIHMAYHSGVNHYDCYICNRKFYTHSNLEMHMRVHGSEKGHLCSHCKKGFMTEESLQQHLKQHCSSRPYQCSYCSRRFARPHEKVKHERIHTGEKPHECEICGKTFRVSYCLTLHMRTHSGYRPYVCQHCGKRFKAHSVYNHHLLTHSDVRGYKCPYCPKAFKTGVQLAGHKNSHTKPFSCTECNRPFASLYAVRAHMETHKRENNLKYNCYLCGASYARAFALRDHIKEVHVDAPQNGNIALDIIEEGMEASTSILPDNDDISMVTLEMSENVSEMDDEVSGQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226057;
90% Identity: iTF_01226057;
80% Identity: -