Basic Information

Insect: Harpalus rubripes
Gene Symbol: -
Assembly: GCA_963082715.1
Location: OY720451.1:49777442-49780368[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.9 2.3e+02 4.8 0.0 3 20 35 52 34 54 0.93

2 14 6.3 1.6e+03 2.2 0.1 1 12 163 174 163 183 0.87

3 14 0.23 57 6.7 1.5 1 20 317 336 317 338 0.94

4 14 2e-06 0.00051 22.6 3.2 1 23 345 367 345 367 0.99

5 14 2.8e-06 0.00072 22.1 0.6 1 23 386 408 386 408 0.98

6 14 0.023 5.7 9.8 0.4 1 23 438 459 438 459 0.83

7 14 4.1e-07 0.0001 24.8 1.4 1 23 465 487 465 487 0.98

8 14 0.045 11 8.9 5.0 3 23 495 515 493 515 0.95

9 14 0.0015 0.39 13.5 2.8 1 23 521 543 521 543 0.99

10 14 9.7e-07 0.00025 23.6 4.2 1 23 549 571 549 571 0.98

11 14 0.002 0.5 13.2 6.7 1 23 577 599 577 599 0.98

12 14 3.1e-05 0.0079 18.8 0.2 1 23 605 627 605 627 0.98

13 14 2.7e-05 0.0069 19.0 0.1 1 23 631 653 631 653 0.98

14 14 0.00085 0.22 14.3 0.1 1 23 661 684 661 684 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.9	2.3e+02	4.8	0.0	3	20	35	52	34	54	0.93
2	14	6.3	1.6e+03	2.2	0.1	1	12	163	174	163	183	0.87
3	14	0.23	57	6.7	1.5	1	20	317	336	317	338	0.94
4	14	2e-06	0.00051	22.6	3.2	1	23	345	367	345	367	0.99
5	14	2.8e-06	0.00072	22.1	0.6	1	23	386	408	386	408	0.98
6	14	0.023	5.7	9.8	0.4	1	23	438	459	438	459	0.83
7	14	4.1e-07	0.0001	24.8	1.4	1	23	465	487	465	487	0.98
8	14	0.045	11	8.9	5.0	3	23	495	515	493	515	0.95
9	14	0.0015	0.39	13.5	2.8	1	23	521	543	521	543	0.99
10	14	9.7e-07	0.00025	23.6	4.2	1	23	549	571	549	571	0.98
11	14	0.002	0.5	13.2	6.7	1	23	577	599	577	599	0.98
12	14	3.1e-05	0.0079	18.8	0.2	1	23	605	627	605	627	0.98
13	14	2.7e-05	0.0069	19.0	0.1	1	23	631	653	631	653	0.98
14	14	0.00085	0.22	14.3	0.1	1	23	661	684	661	684	0.96

Sequence Information

Coding Sequence: ATGGGGGCTTTAGAATTAGATTGCCCATTATGCTGCACAGAAACTTTTACATGCTTACAATCACTAAAGTATCATTTATTAAGCATCATAGATAATATTTTATGCCCATCTTGTGGATCTCGATTTTCAACTATTCTCGAACTAGCGGACCACTTGGATAACGAATGTGGCAGAACAAATGAAAAAAGTGCGGCAAATTCAGAGTCGGAAAGagaaataactataaaaattgaGAACGAGGATTCCAGTGATGCAACTTTAAACAATAGTATTCTAGCCAAAGCATTGCTTAGTCCAAATGTGCCGAAGAAAACtgtttatattaaaacaaatcaAAGTGGTGATACTGTTATTGAACAAACTGAACAAGTTTatgtcaacgaaaataatgatGAATCGATGGAAGCTGAAGAAACACATGAAGGAGCCGAAGAAGATGAAGAACTCGTAGAAGTTCCAGATCAATCAGAATCAGATCAAGAAGTTTATTCTTGTTTAAGCTGTGGGTTGAATTTCAGTTCCGTTGTTGAGCATATTCAAGAATACCATGAAGGAGAAGAAGTCATTGTTGAGATGACAGAAAATAATCAAGGAGATAAAGATAACGCCGACCTCTTGAAAGACATCTCTGAAGGCACAGCCATCATCTCCGAAGAAGGCGTCATCTTCGAAGACGATGACGATGCCGGCAGCAACGGCAGTCAGGAAGTCATTGAAATCAGCGGAAGAAGTCGCATGCCACAAATTCTAAACACCATCAAACAAGAAGACTGCATTGACAAGGACGGTAGACTTTACACCCGAAAAGTAGTCCAGATAGAGAAATTTTGGGATGACTCTATTAAGAAAATACCAATAGTAGTGAAATATATTGTCGACTCAGACGGAACTTTAACCAAATATGACGAAGGAGATGATCTTCCAGATGGAACTCAGATTATGGAAATATATCAATGTACTTCTTGTAATGTTCAGTTTCCAAAGAGAGACCAATTTGATTCACATGTTTGCGAACCAGAAATTGGCAGTGAATATAAATGTTCTATATGCGATTCGAGTTTTACAAGTTCTCAATCACTATGCGCGCACATGAAAACTCATAAACAAACCAGAACAAGAACAGAAATTCACCATGATGGTCCTCCTACCGGTCCGtttgtgtgtaacgtgtgtgataCCGTCTTCCCGAGCAACAAATCCTTACGATTGCATCGCAGAATGCACGACCCTATCAAAGCCAAAGAAATCGATGCCCCAGTAGAGTACGGAATCACTGGAAACGAAACCGGGGAAAATAAAGTCCGAGAAATGTTTATTTGTAAAGTTTGCGGAAAGAGTTACGATAAAAGTTACGAGGAAATACATATGGCCTACCACAGTGGCATAAACCATTACGATTGTTACATTTGCAACCGTAAATTTTACACTCAAAGCAATTTGGAAATGCATATGCGCGTTCATGGAAGCGAAAAAGGACATTTGTGTAAGCATTGCAAAAAGGGATTTTTGACTGAAGAAAGTTTGCAACAACATTTAAAGCAACATTGCAGCAGTAGACCTTATCAATGTAGTTTTTGTTCGAGGAGATTCGCTCGCCCACATGAAAAAGTCAAACATGAAAGAATTCACACTGGGGAGAAGCCCCACGAGTGTGAAATATGCGGTAAAACATTCCGAGTTAGCTATTGTCTTACACTTCACATGCGTACCCATTCCGGTTACAGACCCTACGTTTGCCAACACTGTGGCAAACGATTCAAAGCTCACAGTGTCTACAACCATCATTTACTGACTCACTCCGATGTACGAGGTTATAAATGCCCTTACTGCCCTAAAGCATTTAAAACCGGCGTCCAGCTCGCTGGTCACAAAAACAGCCACACCAAGCCGTTCAGTTGCACGGAATGCAACCGTCCGTTCGCTAGTTTGTACGCAGTACGCGCTCATATGGAAACTCACAAAAGGGAGAACAATCTGAAATATAATTGCTACCTATGTGGTGCTTCCTATGCGAGGGCATTCGCCCTGAGAGATCACATCAAAGAGGTCCATGTGGACGCCCCACAAAATGGAAATATATCGTTAGATATCATCGAAGAAGGAATGGAAGCGTCGACGAGTATTTTGCCGGATAATGAAGATGATATTTCCATGGTGACTCTAGATATGTCGGAAGGGATTGATGAAGAAGTAAGTGCGCAATGA
Protein Sequence: MGALELDCPLCCTETFTCLQSLKYHLLSIIDNILCPSCGSRFSTILELADHLDNECGRTNEKSAANSESEREITIKIENEDSSDATLNNSILAKALLSPNVPKKTVYIKTNQSGDTVIEQTEQVYVNENNDESMEAEETHEGAEEDEELVEVPDQSESDQEVYSCLSCGLNFSSVVEHIQEYHEGEEVIVEMTENNQGDKDNADLLKDISEGTAIISEEGVIFEDDDDAGSNGSQEVIEISGRSRMPQILNTIKQEDCIDKDGRLYTRKVVQIEKFWDDSIKKIPIVVKYIVDSDGTLTKYDEGDDLPDGTQIMEIYQCTSCNVQFPKRDQFDSHVCEPEIGSEYKCSICDSSFTSSQSLCAHMKTHKQTRTRTEIHHDGPPTGPFVCNVCDTVFPSNKSLRLHRRMHDPIKAKEIDAPVEYGITGNETGENKVREMFICKVCGKSYDKSYEEIHMAYHSGINHYDCYICNRKFYTQSNLEMHMRVHGSEKGHLCKHCKKGFLTEESLQQHLKQHCSSRPYQCSFCSRRFARPHEKVKHERIHTGEKPHECEICGKTFRVSYCLTLHMRTHSGYRPYVCQHCGKRFKAHSVYNHHLLTHSDVRGYKCPYCPKAFKTGVQLAGHKNSHTKPFSCTECNRPFASLYAVRAHMETHKRENNLKYNCYLCGASYARAFALRDHIKEVHVDAPQNGNISLDIIEEGMEASTSILPDNEDDISMVTLDMSEGIDEEVSAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01226057;
90% Identity: iTF_00769045; iTF_01104984;
80% Identity: -