Prub015303.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754922.1:7971577-7975456[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00073 6.1 7.5 0.1 21 48 274 301 269 303 0.92 2 13 0.011 94 3.7 0.0 21 43 303 325 298 330 0.85 3 13 0.006 51 4.6 0.1 21 50 377 406 373 410 0.90 4 13 0.0059 49 4.6 0.0 16 44 428 456 417 460 0.80 5 13 0.0016 13 6.4 0.0 21 48 502 529 498 531 0.90 6 13 0.01 87 3.8 0.0 27 46 537 556 534 558 0.91 7 13 0.051 4.3e+02 1.6 0.0 21 48 607 634 604 637 0.89 8 13 0.16 1.4e+03 0.0 0.0 23 44 650 671 647 678 0.76 9 13 0.00088 7.4 7.3 0.1 9 47 721 759 713 764 0.77 10 13 0.00017 1.4 9.6 0.0 22 46 762 786 758 792 0.89 11 13 0.15 1.2e+03 0.2 0.0 22 52 790 820 787 822 0.83 12 13 0.065 5.5e+02 1.3 0.1 21 48 817 844 811 845 0.87 13 13 0.0018 15 6.3 0.2 20 44 845 869 841 877 0.89
Sequence Information
- Coding Sequence
- ATGCCTGATTCAGCTCTGTGTCGAGTGTGTCTTGCGGCCAATACCAAAATGTACAATATCTCCAACACTCGGTATCAAGAGATGTTTGAGAAAATGACAGGGGACATGcTGTTGTCTGGAGATGGACGACCTGACACCCTGTGCTTTATATGTCACTCACATGTCCAGAAACTCTGGAGGTTTATTGAGATGTCACAGAACTCTGAGAAACATCTTACAAAGTTTCTTGGTTATGGCATACAGGTGACACAATTATCCACAGCTCAGCTTGAGAAAGTGACTAACTTGTCAGTCACCTCTATCAAGCAAACATTTGACTTTACAATTTTTGATGATGTGAAGGAAGAAACTGAAAGTCCTGTAAAAATGGAGTCATTCACTGACAAGAGAGAGCAACTACATGATGAAATTGAAGATCCTGCAATGGAGTCTTATAATGAAGACTCGGAGTCAGATCCTTTAGAAGCTGTCGAAGTTGTAACTGTTAAAGTGGAATCCAATGAACCAAAGCTGCTAATCACTGCCTATCCATGTGAAGTCTGCCCGCGGCGTTTTAACTCTATTCAAGATTTAAAACGACAcaaaaaatcctttcataaGCTACAGCATAACTGCAAATCTTGCGACGAAACATTTGAAGATCCCAatcttttaaaaatacatatgaGATTTCACAAACAAGAAGAGAAGAAGAACAGTGATAATGCAGATCGAGAATCTCTAATCGTTTCCACTGGGGAGAAATTCGGCTGTGTACTCTGCAAGAAGATATTTAGCCAGAAAGGACATTTGAAAACTCATATTATGGCTTTTCACACTGGGGAAAAGCCATTTGCTTGCAGTCTGTGCGATAAAAGATTCGTTCAAAAAAGCAATCTGAGAACGCATATGAGATTTGCGCACACCGAGGAAAAACCATTCACTTGTACTATGTGTAAGGGAGTGTGCAGCGATGAGAGCCATCTGAAAGAACACAAGTCTATTCACTGTGGAGAGAATACATTAGCGAGTAATATGGAACTCATTAAGGACGCTAACGGGGGTACAAAGCCCTATGCTTGCGGTAGGTGCGAAAAGGCATTTACAGCAAAAGCTCACTTAAAATCTCATGTAATGGCGATTCATACCGGAGAGCGACCGTTTGCGTGCACTATGTGCGATAAAAAATACACTCAAAAAAGCCATTTAAGATTACACGCCCGACTGTCGCACGTCGTCGAAAAACCATTCGCATGCAACGATTGCGAGATGAGATTCGATGACCCTGAAGGTTTAAGAAAACACTCCAAAACACACACTGGAAAGTCTTTTATATGTACTACGTGCCATAAAGTATTCCTATCAGAAACCAATCTTAGGAAACACATGTATGTTCACAGTGATGATATTGACAAGTACACTATAAAAACAAGCGTGAAAGTAAAGCCTTTTGCCTGCGTAATATGCAGCAAGAAATTCGGCTGGAAATCTCATTTGAAATCACATATAATGGCAATTCACAcaggagaaaagccatattcgtGCTCCGTATGCGATAAAAAGTTTGTACAGCAAAGCAATTTAAGATTCCACGCAAAAGTAGCACACTCTATAGTAACACTACTGAATTGTGGCATTTGCAAGAAAGTGTTCCGAAGGGAGAGTACTCTAAAGAAGCATATGAGTATTCACGATGGAGAAACTTCAATTGAAAATGATGAAAACGCTGAAACTGATGAAAATTCCCATAATAAAGATAAACCGTTTGAATGCAAGTTGTGCAATAAAAGATTTGGTTGGAAATCCCATTTAAAAACACATATAATGGCACTACACACCGACGAGAGACCTTTTGGGTGCACTTTGTGTGATAAAAAGTTCGTCCAAAAAAGCTACCTAAGATACCACATGAAAACTGCTCATCCTGGAGAAAGAGCAACGCAGCACATGCTAAACATCGGAGCAGGCAGGCCGTTTACATGCAAAATATGTTCCATCAAattcacaaataaaattaactttgaaAATCACAAAAAACTGCACATAGATACGCCTCCATTCTTATGCGTCGAGTGTGATGCAAAATTTAATTCGAAGATAGATTTAGATTCACATAACCTGAGCTTGCACGCCGGTGATTTACCGTTTGCCTGCGAGACATGTCACTCGCGATTCAAAGATGGCAATGGCTTGCAGAAACATCAACTTACGCATGTGGACAATAAACCACTTACTTGTGATATTTGCAGCAGAACTTTCCTCGCCCGTAGCGGTTTAAGACGACACATGGTTATCCACAGTGACGACAAACCTTTCGCATGCTCACTTTGCAAGAAAACCTTCAAGCAAGAACGAGTTTTAAGAAAGCACATGCAAATTCATACTGGGGAAAAGAACTATGGATGCGACATCTGCGACAGAAAGTTCTATCAAAGAGGCAACTTGATAAGCCATATGAGAATTCACTCTGGAGAAAAGCCATTTGTTTGCGACCGCTGCGGAAACAGTTTCAACCAGAAAAGTCATTTAAGAACTCATGTGTTGTTCATGCATAGTTCTGAGAAGCCATTTACTTGCGGCGTGTGTAACAAGAAGTTCAGGCTTAGAAGTTGTTTGAGAAATCATCAAATGGTCCACACTGGAGAAAGGCCATACCCATGCGAAAAATGTGAAAAGAAGTATTATAAAAAGGGCGAATTAAAGTCGCATGTATTAAAAATGCATtcctaa
- Protein Sequence
- MPDSALCRVCLAANTKMYNISNTRYQEMFEKMTGDMLLSGDGRPDTLCFICHSHVQKLWRFIEMSQNSEKHLTKFLGYGIQVTQLSTAQLEKVTNLSVTSIKQTFDFTIFDDVKEETESPVKMESFTDKREQLHDEIEDPAMESYNEDSESDPLEAVEVVTVKVESNEPKLLITAYPCEVCPRRFNSIQDLKRHKKSFHKLQHNCKSCDETFEDPNLLKIHMRFHKQEEKKNSDNADRESLIVSTGEKFGCVLCKKIFSQKGHLKTHIMAFHTGEKPFACSLCDKRFVQKSNLRTHMRFAHTEEKPFTCTMCKGVCSDESHLKEHKSIHCGENTLASNMELIKDANGGTKPYACGRCEKAFTAKAHLKSHVMAIHTGERPFACTMCDKKYTQKSHLRLHARLSHVVEKPFACNDCEMRFDDPEGLRKHSKTHTGKSFICTTCHKVFLSETNLRKHMYVHSDDIDKYTIKTSVKVKPFACVICSKKFGWKSHLKSHIMAIHTGEKPYSCSVCDKKFVQQSNLRFHAKVAHSIVTLLNCGICKKVFRRESTLKKHMSIHDGETSIENDENAETDENSHNKDKPFECKLCNKRFGWKSHLKTHIMALHTDERPFGCTLCDKKFVQKSYLRYHMKTAHPGERATQHMLNIGAGRPFTCKICSIKFTNKINFENHKKLHIDTPPFLCVECDAKFNSKIDLDSHNLSLHAGDLPFACETCHSRFKDGNGLQKHQLTHVDNKPLTCDICSRTFLARSGLRRHMVIHSDDKPFACSLCKKTFKQERVLRKHMQIHTGEKNYGCDICDRKFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLRTHVLFMHSSEKPFTCGVCNKKFRLRSCLRNHQMVHTGERPYPCEKCEKKYYKKGELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01219952; iTF_01429599; iTF_01429228;
- 90% Identity
- iTF_01219952;
- 80% Identity
- iTF_01219952;