Tobe004676.2
Basic Information
- Insect
- Thera obeliscata
- Gene Symbol
- Zbtb41
- Assembly
- GCA_947578465.1
- Location
- OX387918.1:16881288-16894527[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 9.2e-05 0.0056 17.5 0.6 1 23 364 387 364 387 0.97 2 23 0.0003 0.018 15.9 0.2 1 23 390 412 390 412 0.98 3 23 8.2e-05 0.005 17.6 2.1 3 23 439 460 437 460 0.94 4 23 1.2e-07 7.6e-06 26.5 1.4 1 23 466 489 466 489 0.96 5 23 0.0039 0.24 12.3 3.1 1 23 495 517 495 517 0.98 6 23 0.00022 0.014 16.3 0.2 1 23 540 563 540 563 0.93 7 23 2.6e-05 0.0016 19.2 3.0 1 23 569 592 569 592 0.95 8 23 5.1e-05 0.0031 18.3 0.4 1 23 598 620 598 620 0.97 9 23 0.00038 0.024 15.5 2.0 1 23 625 647 625 647 0.97 10 23 0.00072 0.044 14.7 0.8 1 23 670 693 670 693 0.95 11 23 6.7e-05 0.0041 17.9 0.7 1 23 699 722 699 722 0.94 12 23 2.2e-05 0.0013 19.4 1.9 3 23 730 750 728 751 0.94 13 23 0.0034 0.21 12.5 1.5 1 23 773 796 773 796 0.95 14 23 6.9e-05 0.0043 17.9 4.6 1 23 802 825 802 825 0.97 15 23 0.00037 0.023 15.6 1.6 1 23 843 865 843 865 0.96 16 23 0.052 3.2 8.8 0.7 1 22 871 892 871 894 0.85 17 23 0.0029 0.18 12.7 3.8 1 23 900 922 900 922 0.98 18 23 0.013 0.78 10.7 0.4 2 23 929 950 928 950 0.95 19 23 0.0015 0.093 13.6 1.2 3 23 958 978 956 978 0.91 20 23 2.5e-06 0.00015 22.4 0.3 3 23 986 1006 984 1006 0.98 21 23 0.00012 0.0073 17.1 2.4 1 23 1012 1035 1012 1035 0.92 22 23 0.0001 0.0063 17.3 3.9 1 23 1041 1063 1041 1063 0.98 23 23 0.00043 0.027 15.3 1.0 1 23 1069 1092 1069 1092 0.96
Sequence Information
- Coding Sequence
- atgccggtcatgccgagggaaggcgtgagcactcgcgctaAGACTGGCTCGCAGCAAGCAGGTGGCTCCGGCGCCGAGGCTCCTGAGGAAGAAACCCCTGGGCGCCGAGACAACTCCGGTGGAGTAACCCCGGAAAGTTCGTCGATGAGGACCCAGGTTGGACCAGACCTTGGCGCCTTATTTGAGCAGCTGCGCGCCATGCAAGCGGACCAGGCTCGCCGGGaggaggaacaagcccgccggcaggaggagcaagcccgccggcaggaggagcagctgcgcgccatccaggaggagcaagctcgccgccaagaagaggatgcccgccggcaggaggagcaagcccgccggcaggaggagcagctgcgcgccatccaggaggagcaggcacgccgccaagaagaggatgcccgccgccaggaggagcaaggccaccggcaagaggaacagatgtgcGCATTGCAGAAAAGTCTCTTGACCGCTATCACCGACAGCATGCGGAGGGTAGAAGCGGTGGAGGAAACTATACAGCAGCATGAGACTCGCCTCTGTTCCATTGAAGAAGGTATCAAAACTGTACAACAACACGGAAGCCGCCTCTCTTCCGTCGAGGAAGTCGTCAAGAAGCTCGAAACGAATGGAATACCGGCCTCAGCGTCCATACTATTGTCTGGAGATGGTCGACCTGACACCCTGTGCTTCCTATGTCACTCTCAGGTCCAAAAGCTCTGGAGGTTCATTGAAATGACTCGCAACTCAGAAAGGAACCTGACTAAGTTTCTTAGTTACGGAGTACAGCTAACTGGTCTATCAGCATCACTGCTTGAGAATGTGAGCAGTCAAAATTTTTCAATCACTGCGGTCAAGCAAACATTTGACTATATTATTTTTGATGGTGTGAAGGAAGAAACTGAAACTCCTTTTAAGGTGGAGTCATTGGGGGACAAGATAGAGCAACTAACTGGTGACATTGAAGATCCTGGAAGGCAGTATTATGAGGAATCTACCTCTGAATCAGATCCATTAGAAGCTGTTGAAATTGTAACTGTGAAAGCGGAATCCAATGAAACAAACCTCTCAATTGCTGCCTTTCCATGTGACGTATGCCCGATGCGTTTCAACTCTAGCAAAACTTTGAACCAGCACAAAAACACCGTTCATAAGCAATACAATTGCCAATCTTGTGGCGATACTTTTGCAGATCCTAATCTTTTGAAAATACACATGAGACTTCACAAACAAGACCCTAAGGTATGTTACAGTGATAACGTAAACCGAGACTCTCTAATCGTTCCATCGGGGGAGAAATTTGGCTGTGTACTCTGCAAGAAGACATTTACCCAAAAAGGGCATTTGAAAAATCATATTATGGCTTTCCACACAGGGGAAAAGCCATATGCTTGTAATATGTGCGATAAAAGGTTCGTTCAAAAAAGCAATCTGAGAACCCATATGAGATTTGCGCACACTGAAGAAAGACCTTTCACTTGTACTTTGTGCAAAGGAGTGTGCAACGACGAAAGCCATTTAAAGGAACACATGACTATTCACTGCGGAGAAACTTCATTAGCAAGTAATACAGATATTATTACGAACGTTAACGAGGGTACCAAGCCCTATGCCTGCGCAAGGTGTGGAAAGGCATTTACAGCAAAGGCTCATTTAAAATCTCATGTAATGGCGATTCACACTGGAGAGCGACCGTTTGCCTGCACTATGTGCGATAAAAAATACACGCAGAAAAGCCATCTAAGATTACACGCAAGACTGTCGCACGTTGTTGAAAAACCATTCGCATGTGATGATTGCGAAAAAAGATTCGATGACGATGAAAGCTTAAGAAAACACGCCAAAACTCACGCTGGCAAGTCATTTATATGCACTACTTGCCATAAAGTATTCCTAACGGCAACCACTCTTAGGAGACACATGGATGTTCATAGTGAAGCACCAGCATGCGACGATATCGACAAGTACACAATAAAAAGAAGCGTGAAAGCCAAGACCTTTACTTGCGCAATATGCAGCAAGACATTCGGCTGGAAATCTCATTTGAAGTCACACATAATGGCAATTCACACTGGAGAAAGGCCATATTCGTGCTCCGTTTGTGATAAAAAGTTCGTACAACAAAGTAATTTAAGGTTCCACGCAAAAGTAGCACACTCGACAGTTACACTTATGAATTGTGGCATTTGCAAGAAAGTGTTCCGGAGGGAGATAACTCTGAGAAGACATATGAGCATTCACCATGGCGGAGAAACTTCAATAGAAAACACTGAAACTATTGAGAATTTTCAAAATAAAGTTAAGCCGTTTGAATGCAAGTTGTGCAGTAGAAGATTTGGTTGGAAATCCCATTTAAAAACTCACATAATGGCAATACACACTGATGAGAGACCTTTTTCGTGCGCTTTGTGTGACAAAAAGTTTGTCCAAAAGAGCTACCTCAGATACCACTTGAAAACATGTCATCCAGGAGAAAGATCAACACCACACATGCTAAATATCGGAGCGGGCAGGCCGTTCACATGCAAAATATGTTCCATAAAATTCACAAATAAAATAAACTTTGAAAATCATAAAATACTGCATGCAGACACGCCTCCATTCTTATGCACTCAATGCGATACAAAGTTCAACTCGAAGATCGATCTAGATTCACATAACGTTAGCTTGCACGCTACAGAATTACCGTTTACATGCGAAACATGTCACTCGCGGTTCAAGGATGACAACGGCTTGAAAAAACATCAACTGACGCATCTCGAGAATAAACCACTCACTTGTGTTACTTGCAGCAGAACATTTCTCGTACGTAGCGCTTTGAGACGGCACATGGTTATCCACAGTGATGACAAACCATTCGCATGCATACTTTGCAAGAAAACCTTCAAGCAAGAAAGAGTTTTAAGAAAACACATGCAAATTCATACCGGAGAAAAGAAGTATGGATGCGACATTTGCGACAGGAAGTTTTACCAAAGGGGCAACTTGATAAGCCATATGAGAATTCATTCCGGAGAAAAGCCATTTGTTTGCGACCGCTGCGGAAACAGTTTCAACCAAAAAAGCCATTTACGAACTCATGTGTTGTTCATGCATAGTTCGGAGAAGCCATTCAGTTGTGGAGTGTGTAACAAGAAGTTCAGGCTTAAGAGTTGTTTGAGAAATCATCAGATGGTCCATACTGGCGAAAGGCCATACCCATGTGAAAAATGTGAAAAGAAGTATTATAAAAAGGGTGAACTCAGGTCGCATGTTTTAAAAATGCATTCCTAA
- Protein Sequence
- MPVMPREGVSTRAKTGSQQAGGSGAEAPEEETPGRRDNSGGVTPESSSMRTQVGPDLGALFEQLRAMQADQARREEEQARRQEEQARRQEEQLRAIQEEQARRQEEDARRQEEQARRQEEQLRAIQEEQARRQEEDARRQEEQGHRQEEQMCALQKSLLTAITDSMRRVEAVEETIQQHETRLCSIEEGIKTVQQHGSRLSSVEEVVKKLETNGIPASASILLSGDGRPDTLCFLCHSQVQKLWRFIEMTRNSERNLTKFLSYGVQLTGLSASLLENVSSQNFSITAVKQTFDYIIFDGVKEETETPFKVESLGDKIEQLTGDIEDPGRQYYEESTSESDPLEAVEIVTVKAESNETNLSIAAFPCDVCPMRFNSSKTLNQHKNTVHKQYNCQSCGDTFADPNLLKIHMRLHKQDPKVCYSDNVNRDSLIVPSGEKFGCVLCKKTFTQKGHLKNHIMAFHTGEKPYACNMCDKRFVQKSNLRTHMRFAHTEERPFTCTLCKGVCNDESHLKEHMTIHCGETSLASNTDIITNVNEGTKPYACARCGKAFTAKAHLKSHVMAIHTGERPFACTMCDKKYTQKSHLRLHARLSHVVEKPFACDDCEKRFDDDESLRKHAKTHAGKSFICTTCHKVFLTATTLRRHMDVHSEAPACDDIDKYTIKRSVKAKTFTCAICSKTFGWKSHLKSHIMAIHTGERPYSCSVCDKKFVQQSNLRFHAKVAHSTVTLMNCGICKKVFRREITLRRHMSIHHGGETSIENTETIENFQNKVKPFECKLCSRRFGWKSHLKTHIMAIHTDERPFSCALCDKKFVQKSYLRYHLKTCHPGERSTPHMLNIGAGRPFTCKICSIKFTNKINFENHKILHADTPPFLCTQCDTKFNSKIDLDSHNVSLHATELPFTCETCHSRFKDDNGLKKHQLTHLENKPLTCVTCSRTFLVRSALRRHMVIHSDDKPFACILCKKTFKQERVLRKHMQIHTGEKKYGCDICDRKFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLRTHVLFMHSSEKPFSCGVCNKKFRLKSCLRNHQMVHTGERPYPCEKCEKKYYKKGELRSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220315;
- 90% Identity
- iTF_01429599;
- 80% Identity
- iTF_01429599;