Prub015303.1
Basic Information
- Insect
- Plemyria rubiginata
- Gene Symbol
- -
- Assembly
- GCA_963576535.1
- Location
- OY754922.1:7971577-7975456[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 9e-05 0.0059 17.5 1.0 1 23 176 199 176 199 0.97 2 23 9.3e-05 0.0061 17.4 1.6 1 23 203 225 203 225 0.96 3 23 0.00021 0.013 16.3 1.5 3 23 251 272 249 272 0.94 4 23 2.9e-07 1.9e-05 25.4 1.4 1 23 278 301 278 301 0.95 5 23 0.011 0.72 10.9 3.7 1 23 307 329 307 329 0.97 6 23 0.00085 0.055 14.4 0.3 1 23 352 375 352 375 0.94 7 23 2e-05 0.0013 19.5 3.0 1 23 381 404 381 404 0.95 8 23 7.6e-05 0.0049 17.7 0.3 1 23 410 432 410 432 0.97 9 23 0.00052 0.034 15.1 2.9 1 23 437 459 437 459 0.97 10 23 0.0041 0.26 12.3 0.6 1 23 477 500 477 500 0.94 11 23 5.3e-05 0.0035 18.2 0.7 1 23 506 529 506 529 0.94 12 23 1.3e-06 8.4e-05 23.3 1.0 2 23 536 557 535 557 0.96 13 23 0.00057 0.037 15.0 1.9 1 23 582 605 582 605 0.95 14 23 3.3e-06 0.00021 22.0 1.3 3 23 613 634 611 634 0.97 15 23 0.00022 0.014 16.3 2.7 1 23 652 674 652 674 0.98 16 23 0.11 7 7.8 0.2 1 23 680 703 680 703 0.90 17 23 0.0037 0.24 12.4 2.0 1 23 709 731 709 731 0.97 18 23 0.0046 0.3 12.1 0.2 2 23 738 759 737 759 0.96 19 23 2.6e-05 0.0017 19.2 1.7 1 23 765 787 765 787 0.97 20 23 2e-06 0.00013 22.7 0.3 3 23 795 815 793 815 0.98 21 23 9.5e-05 0.0061 17.4 2.4 1 23 821 844 821 844 0.92 22 23 8.8e-05 0.0057 17.5 3.9 1 23 850 872 850 872 0.98 23 23 0.00033 0.022 15.7 1.1 1 23 878 901 878 901 0.96
Sequence Information
- Coding Sequence
- ATGCCTGATTCAGCTCTGTGTCGAGTGTGTCTTGCGGCCAATACCAAAATGTACAATATCTCCAACACTCGGTATCAAGAGATGTTTGAGAAAATGACAGGGGACATGcTGTTGTCTGGAGATGGACGACCTGACACCCTGTGCTTTATATGTCACTCACATGTCCAGAAACTCTGGAGGTTTATTGAGATGTCACAGAACTCTGAGAAACATCTTACAAAGTTTCTTGGTTATGGCATACAGGTGACACAATTATCCACAGCTCAGCTTGAGAAAGTGACTAACTTGTCAGTCACCTCTATCAAGCAAACATTTGACTTTACAATTTTTGATGATGTGAAGGAAGAAACTGAAAGTCCTGTAAAAATGGAGTCATTCACTGACAAGAGAGAGCAACTACATGATGAAATTGAAGATCCTGCAATGGAGTCTTATAATGAAGACTCGGAGTCAGATCCTTTAGAAGCTGTCGAAGTTGTAACTGTTAAAGTGGAATCCAATGAACCAAAGCTGCTAATCACTGCCTATCCATGTGAAGTCTGCCCGCGGCGTTTTAACTCTATTCAAGATTTAAAACGACAcaaaaaatcctttcataaGCTACAGCATAACTGCAAATCTTGCGACGAAACATTTGAAGATCCCAatcttttaaaaatacatatgaGATTTCACAAACAAGAAGAGAAGAAGAACAGTGATAATGCAGATCGAGAATCTCTAATCGTTTCCACTGGGGAGAAATTCGGCTGTGTACTCTGCAAGAAGATATTTAGCCAGAAAGGACATTTGAAAACTCATATTATGGCTTTTCACACTGGGGAAAAGCCATTTGCTTGCAGTCTGTGCGATAAAAGATTCGTTCAAAAAAGCAATCTGAGAACGCATATGAGATTTGCGCACACCGAGGAAAAACCATTCACTTGTACTATGTGTAAGGGAGTGTGCAGCGATGAGAGCCATCTGAAAGAACACAAGTCTATTCACTGTGGAGAGAATACATTAGCGAGTAATATGGAACTCATTAAGGACGCTAACGGGGGTACAAAGCCCTATGCTTGCGGTAGGTGCGAAAAGGCATTTACAGCAAAAGCTCACTTAAAATCTCATGTAATGGCGATTCATACCGGAGAGCGACCGTTTGCGTGCACTATGTGCGATAAAAAATACACTCAAAAAAGCCATTTAAGATTACACGCCCGACTGTCGCACGTCGTCGAAAAACCATTCGCATGCAACGATTGCGAGATGAGATTCGATGACCCTGAAGGTTTAAGAAAACACTCCAAAACACACACTGGAAAGTCTTTTATATGTACTACGTGCCATAAAGTATTCCTATCAGAAACCAATCTTAGGAAACACATGTATGTTCACAGTGATGATATTGACAAGTACACTATAAAAACAAGCGTGAAAGTAAAGCCTTTTGCCTGCGTAATATGCAGCAAGAAATTCGGCTGGAAATCTCATTTGAAATCACATATAATGGCAATTCACAcaggagaaaagccatattcgtGCTCCGTATGCGATAAAAAGTTTGTACAGCAAAGCAATTTAAGATTCCACGCAAAAGTAGCACACTCTATAGTAACACTACTGAATTGTGGCATTTGCAAGAAAGTGTTCCGAAGGGAGAGTACTCTAAAGAAGCATATGAGTATTCACGATGGAGAAACTTCAATTGAAAATGATGAAAACGCTGAAACTGATGAAAATTCCCATAATAAAGATAAACCGTTTGAATGCAAGTTGTGCAATAAAAGATTTGGTTGGAAATCCCATTTAAAAACACATATAATGGCACTACACACCGACGAGAGACCTTTTGGGTGCACTTTGTGTGATAAAAAGTTCGTCCAAAAAAGCTACCTAAGATACCACATGAAAACTGCTCATCCTGGAGAAAGAGCAACGCAGCACATGCTAAACATCGGAGCAGGCAGGCCGTTTACATGCAAAATATGTTCCATCAAattcacaaataaaattaactttgaaAATCACAAAAAACTGCACATAGATACGCCTCCATTCTTATGCGTCGAGTGTGATGCAAAATTTAATTCGAAGATAGATTTAGATTCACATAACCTGAGCTTGCACGCCGGTGATTTACCGTTTGCCTGCGAGACATGTCACTCGCGATTCAAAGATGGCAATGGCTTGCAGAAACATCAACTTACGCATGTGGACAATAAACCACTTACTTGTGATATTTGCAGCAGAACTTTCCTCGCCCGTAGCGGTTTAAGACGACACATGGTTATCCACAGTGACGACAAACCTTTCGCATGCTCACTTTGCAAGAAAACCTTCAAGCAAGAACGAGTTTTAAGAAAGCACATGCAAATTCATACTGGGGAAAAGAACTATGGATGCGACATCTGCGACAGAAAGTTCTATCAAAGAGGCAACTTGATAAGCCATATGAGAATTCACTCTGGAGAAAAGCCATTTGTTTGCGACCGCTGCGGAAACAGTTTCAACCAGAAAAGTCATTTAAGAACTCATGTGTTGTTCATGCATAGTTCTGAGAAGCCATTTACTTGCGGCGTGTGTAACAAGAAGTTCAGGCTTAGAAGTTGTTTGAGAAATCATCAAATGGTCCACACTGGAGAAAGGCCATACCCATGCGAAAAATGTGAAAAGAAGTATTATAAAAAGGGCGAATTAAAGTCGCATGTATTAAAAATGCATtcctaa
- Protein Sequence
- MPDSALCRVCLAANTKMYNISNTRYQEMFEKMTGDMLLSGDGRPDTLCFICHSHVQKLWRFIEMSQNSEKHLTKFLGYGIQVTQLSTAQLEKVTNLSVTSIKQTFDFTIFDDVKEETESPVKMESFTDKREQLHDEIEDPAMESYNEDSESDPLEAVEVVTVKVESNEPKLLITAYPCEVCPRRFNSIQDLKRHKKSFHKLQHNCKSCDETFEDPNLLKIHMRFHKQEEKKNSDNADRESLIVSTGEKFGCVLCKKIFSQKGHLKTHIMAFHTGEKPFACSLCDKRFVQKSNLRTHMRFAHTEEKPFTCTMCKGVCSDESHLKEHKSIHCGENTLASNMELIKDANGGTKPYACGRCEKAFTAKAHLKSHVMAIHTGERPFACTMCDKKYTQKSHLRLHARLSHVVEKPFACNDCEMRFDDPEGLRKHSKTHTGKSFICTTCHKVFLSETNLRKHMYVHSDDIDKYTIKTSVKVKPFACVICSKKFGWKSHLKSHIMAIHTGEKPYSCSVCDKKFVQQSNLRFHAKVAHSIVTLLNCGICKKVFRRESTLKKHMSIHDGETSIENDENAETDENSHNKDKPFECKLCNKRFGWKSHLKTHIMALHTDERPFGCTLCDKKFVQKSYLRYHMKTAHPGERATQHMLNIGAGRPFTCKICSIKFTNKINFENHKKLHIDTPPFLCVECDAKFNSKIDLDSHNLSLHAGDLPFACETCHSRFKDGNGLQKHQLTHVDNKPLTCDICSRTFLARSGLRRHMVIHSDDKPFACSLCKKTFKQERVLRKHMQIHTGEKNYGCDICDRKFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLRTHVLFMHSSEKPFTCGVCNKKFRLRSCLRNHQMVHTGERPYPCEKCEKKYYKKGELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01220315;
- 90% Identity
- iTF_01220315;
- 80% Identity
- iTF_01220315;