Prap015768.1
Basic Information
- Insect
- Pieris rapae
- Gene Symbol
- -
- Assembly
- GCA_905147795.1
- Location
- LR990589.1:405483-417256[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0029 0.23 12.2 1.0 3 23 211 232 210 232 0.96 2 23 0.027 2.1 9.2 0.6 1 22 604 625 604 625 0.95 3 23 1.5 1.2e+02 3.6 0.1 1 23 666 689 666 689 0.86 4 23 0.051 4 8.3 0.5 3 21 700 718 698 719 0.94 5 23 2.9 2.3e+02 2.7 0.0 3 20 728 745 726 749 0.88 6 23 0.0028 0.22 12.2 2.3 3 23 769 790 767 790 0.94 7 23 0.062 4.8 8.0 4.2 1 23 796 819 796 819 0.96 8 23 0.076 5.9 7.7 0.0 1 23 845 868 845 868 0.90 9 23 0.023 1.8 9.4 3.3 1 23 873 895 873 895 0.96 10 23 0.0019 0.15 12.8 0.3 1 23 901 924 901 924 0.95 11 23 8.7e-05 0.0067 17.0 1.6 1 23 937 959 937 959 0.97 12 23 0.00011 0.0083 16.7 1.8 1 23 1007 1030 1007 1030 0.97 13 23 0.0023 0.18 12.5 1.8 1 23 1090 1113 1090 1113 0.96 14 23 0.001 0.081 13.6 1.4 2 23 1133 1155 1132 1155 0.95 15 23 0.021 1.6 9.5 0.2 2 23 1161 1183 1160 1183 0.95 16 23 0.006 0.46 11.2 0.2 1 21 1228 1248 1228 1249 0.95 17 23 0.0018 0.14 12.8 0.3 1 23 1259 1281 1259 1281 0.93 18 23 0.00047 0.036 14.7 0.3 3 23 1375 1396 1374 1396 0.92 19 23 1.1e-07 8.3e-06 26.1 1.1 3 23 1403 1423 1402 1423 0.98 20 23 0.00012 0.0091 16.6 0.0 3 23 1441 1462 1440 1462 0.97 21 23 0.11 8.6 7.2 0.0 1 23 1485 1507 1485 1507 0.97 22 23 0.0072 0.56 11.0 0.4 1 23 1513 1536 1513 1536 0.95 23 23 0.00015 0.012 16.2 0.4 1 23 1544 1567 1544 1567 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTTAATTATGATCGTGTTTGTAGACTATGCTTGTCATCTCGAGGTGAATTACTGCCGATATTTCCTACCACCAGTTCGAATGACTCGGAACCTCTCGTCCTTGCTGTGAAAATTAATGATTGCGTGTCCGTTCAGATTAACGAAAATGATGAATTGCCAACTAATGTCTGCAGAAAGTGCATGGATAATGTCAATAACTGGCACATATTCAAGTCAGTTTGTGAAAGGACTCAAAACAAACTACAATCTCTGATTAATAAAGAGAGCAGCCATCTAGAAGAGATTCATATTAAAACTGAACCAAATGAGGGTTTGTCTGATGGGGGCTATGATGATGGAGTGGTTATCAATGGAACATATCCTGATGATGAAATTGCTGCATCCTCAAGCAAGGTCCAACCTGAAGGCCCACCAATATTGGCATCTTTGGGACTCACTCCGAGAAGCGATAAGGGCGTTGAAAGTGATAAAGATGAAGAGGAAATGGAAATGGAAGACGAGGAGATGAACGAGGATCAGGGCTTTAATGCCCCCAACGTACCTGAAGTGTCCATCACTGTGATGCGTCCTTCGGGCGAGACACTACACTCGCGTCAAGGAATACAACAACTGGCGTCTAAAGACTGTCTCGTGTGCGGCCGCTCTTATAGATATTCTCACAATGCTCGGCGTCACGAACTGACAGCTCACAGCTTCGATAGGTATACAAACAAAATAACGGCCAAAAAATCACACAACCGGATGCAACCTAAATTGCGACCCAACCCGTTTAACCCTAAAGCACGGTTGATGCCGAATCCCATCAGCCATAAGATGCAACTCCAACTGCCCCAACTACAACAATCTATTAAACTCATGCCTAAGAAAATAATAAACCCCCCGAAACCGATTCCCATCAGAAGCCTCAAGCCTTCGCAGAACAATTTGCCTTATCCCTTACGTATCAAGGCGCTTAAAGATTTGCAGATTAAAAAGAAGGAACCGCAAATATTGAAAACGCTACTGACGACCAAACCGGAGGTTCTAGTATCGGAGCCAGAAATTATTAACTCGGGGCCGGAAAGCCCCGAAACGTTGATATCCGAACCGGAGATAGCCTCATTCCAAGTCGAAACTATCTTATCTGAGCCCGATGGCTTCATCCACCACGACGACGATGATAAAGATGACGACGTCAAAAATCATAACCAAAATTACGACACTGTCGATATGGATTCAGATAATGAAATTGAAATCGCCCGTCAACCCGATAATGAGGAAGAAACAGAAGTTAGGCCCCAGACCGAAGCAGGAGAGAATGATAACGAGGAAGAAAATGCGGCAGACGAACAACAGAACGATTTAGGAAAAGAAAATGAAGGGATAGATCAAAGTCAGGAGAAAGTTTCCGAAGAGCATCACGATGATGGCGAAGAAGATGCAAAAGAGCCCGAAGAAGTGGACAAAGACGTCGATGACGGTCAAGAAAATTACGAATACGACCAAGACGGTGAACCTCCAATAGCCCCTGTCGTGGAAATAAACGAGGATATGCAAAACTCGTACAACAGCGAAGCTATCGAGAACGAAGAAGAGGAATTGGAAGATTACACCGCAGACGACGGTGGAGATGGAGAAGAAGATGCCAAAGAGCTGGATCCGGACAAACAGTACGTTACTAAGACGCAGAGAGAATTCATTCTTAAGTATCGGGACATAATCGAACAAATCAATACTCAGAGGTGTCTCTGCTGCGACAGAGAACATCCCCGAAGGAAAGCGGTCATCCAGCATTTGCAAAAAAATGGGCACAAAGTCCCCAAGCACACGTGCTACAATTGCGTCGTTACATTTTCTCATATCGGTGCTCTGCTGAGCCACATGAGGTCGAACTCTTGCACCGATTTGTGGAAAGTCATCTACAAGGAAGGCGGAATCACCGACGATCAAGTGATCGACGACGAGCCAAAGGTTAAGGTGCAATACAAAGACATTCTCAACGCGAGGTCTTACGCCTGTAAGCTGTGTCCCGCTAAATTCCAACTGAAACAACTCATAATGAAGCACGTGCTCGACGTCCACGAGGATGGCCAATCGCACGTAGTTCTCGCGTGCGTACATTGCGGCTCACGATTTAAAGACAAATCTATTTGGAAGAAGCACATCCGCAACGGCGAATGCACCGTGTACATCGCGTGCGATCTGTGCACCGAAAAGTTTGGCAACGTGCAGGACTTTAACGAGCACGCCGTGGCCGTCCACGCTGGCAATTTCGATCCCGACAGTCAGAGCAAGTGTATCGACGGACGACCGACAGATTGCCCGATATGCGATAAGAAATGCTGCTCTTATCAAGCCCTCGTGAAACACTTGAAAGCGATTCACAACGAAGAGACGCCTCACTACTGCCAACACTGCGAGGCAAAGTTCGAACATGCCGCCGATCTCGACAAGCATACCTACACGGAACATTCTCTCAAGATGCTGGGAACTAACGCTTCCGAGCCGGACATGTCGCTGGTGAAAGAGGAAGCCGAGGAGTACCATTACTCGTGCACCGAATGTAATGCCATATTCGAGACGGTCGACGCGTGGACGGATCACCAGGTCGCCGAACACAATCAGATCGCGCATCACTGCGACCAATGTGAGAAGAAGTTCTTGCGGCCTTCCGAACTGGCCGAGCACAAAAACAGCCATTTGCGTGTCAAATTTTATCCGTGCAGTTTGTGCGGAAACTCTTACAGTAGTCCTCAGAAGCTGTCTCAACACGTCCAACAGACTCATCCCGGATCGAGCACCATAGGTGCGGGAGACACGGACTTCTTCTGCGATATTTGTGTCAGAACGTTCAAAAGCCGCCAGGCTTTCTCGAACCATATGCGTATTCACGCCAAAGTTCCATCCAATAAGAAGAGGCCGGGCGATTCCAGGAGTTTCGCTCCTCAGATTATCGGGAAACCTATTCACTTTTCAATGATCCAACCGGGATTCAGTCCGTTCAAGCCGAACTGTAACGTGCCCAACGCTCCCTATTCTTGTGATATATGCGGAAAAGGATTTATGCATAAGAAAAATATTTGGAAACATAAGAAGGTGTTGCACGCGGATCTTTTGAACGACAGACACGACAGCGAGGAGAACACCATGCACGCTTCCACGGAGGAGGACGAATACAACCCCGACGAGAATGGGGCTATTCTATCGACACCCCAGTTTAACAGCTTCAACTTCGCCAACATGTCCAACTCCATGCAATCGACGCCCCAAGAACCCACGCAGTTCTCGTGTGAATTGTGTTACAAACGCTTTCCGCTCAAGACCAGTCTGTGGAAGCACAAACGCGCCAAGCACGGCATCATCAACCCTTCGGCCACCGACACTTCGGTCGAGGTCAACAACAGTCGCTCCAGTTGTACCATTTGCAAAATATCTTTCGCCGACAAGAAGTCCTATTACCGGCACAGGAAGAACGTCCACAAGTCGTCGGTTCAAATGTGTAAAATATGCGGAAAGCCTTTGAACTCGACCCTGGAGCTCTACGAACACTTGAAATCCGACCACGCGCGAGAACTGTTGGGCTACAACTCCTCTCAAGGCCCCGGAAAGTCTCAGGAGATGCCTCAGGAGGTGGAAGTGGAGTTCGACGACCGGGAGACCGAGCGCCCCGATCCCAACGCCGAGTACCAAGCCCGCTATCCGTGCGACACCTGCGGTAAGCAATTCGTGGGGCTGCTGGCGTTGCAGAACCACCAGTGTATCAATCAGCTGCCCCAGCAGCCGCAAACCTTCGACTGTGAAATATGCCACAAGAGCTACGTCTCCATCGCCGCGCTGAAGAGCCACCGCGGATGGCACCTGCGCTCTCCGGACGGAAAGGCGGCCGCCAACAACTCCGGCCTTTGGATGCCCCAGAACAAAGTGACCAGCAAAGTCAGCAAATACGAGGTCGTCGACGCCTCTCAGCTGGCCCGCGTCTCCCACACCACGACATCGGCCCCCTCCCCCTTGACCAAGCGCAGGCTGCCCCCGGAGGTGGAGGTGACGGTCGTCAACCCAAATAAGAAGTTGCGATCCGACGACTCCGGAGAGATGGACCAGTCGACGAACGCCTCCGGGCCTTCGGACGACAGATACTGTAGGATATGCGACCGAGAGTTCACCAAGCGGGCGGCCTACCAGCGCCACATGGACGAGGTCCACCAACCGAACTCGGTGTTCTGCCCCGTCTGCGACAAGAGCTTCACGCGCAAGAGCACACTCATAGTGCACATGAAGAAGCACTACGACGCCGGGGAGGGCGGCTCCAACCTGCAGGAGGAGGAGGGTTCGGCCTGCGAGGTCTGCGGGGAGCGGTTCGACGACCCCGACGCCCTCAACGCGCATCGCGAGACGCAGCACGGCGACGAAGAGTCCGCCGGGGACTCGGAGGACGACGGCTCCGCTCCGCCGGCGCCGCCCGGCGAGTTCACCTGCGCTCAGTGCGGCGACGGGGTGGCCACGCCCCGCGACCTCATCGCCCACCGCACCATGCACGCCACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCGCCAGGGCCATCGACCTGTCGTCGCACACGCGGGCGAGGCACTCGGACAACGAGAAGGTGTTCTTTCCGTGCGCCATGTGTGACCGATTCTACATGAACAAGAAGAGCCTGCAACGGCACATCGAGATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSNDSEPLVLAVKINDCVSVQINENDELPTNVCRKCMDNVNNWHIFKSVCERTQNKLQSLINKESSHLEEIHIKTEPNEGLSDGGYDDGVVINGTYPDDEIAASSSKVQPEGPPILASLGLTPRSDKGVESDKDEEEMEMEDEEMNEDQGFNAPNVPEVSITVMRPSGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITAKKSHNRMQPKLRPNPFNPKARLMPNPISHKMQLQLPQLQQSIKLMPKKIINPPKPIPIRSLKPSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDGFIHHDDDDKDDDVKNHNQNYDTVDMDSDNEIEIARQPDNEEETEVRPQTEAGENDNEEENAADEQQNDLGKENEGIDQSQEKVSEEHHDDGEEDAKEPEEVDKDVDDGQENYEYDQDGEPPIAPVVEINEDMQNSYNSEAIENEEEELEDYTADDGGDGEEDAKELDPDKQYVTKTQREFILKYRDIIEQINTQRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNSCTDLWKVIYKEGGITDDQVIDDEPKVKVQYKDILNARSYACKLCPAKFQLKQLIMKHVLDVHEDGQSHVVLACVHCGSRFKDKSIWKKHIRNGECTVYIACDLCTEKFGNVQDFNEHAVAVHAGNFDPDSQSKCIDGRPTDCPICDKKCCSYQALVKHLKAIHNEETPHYCQHCEAKFEHAADLDKHTYTEHSLKMLGTNASEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCSLCGNSYSSPQKLSQHVQQTHPGSSTIGAGDTDFFCDICVRTFKSRQAFSNHMRIHAKVPSNKKRPGDSRSFAPQIIGKPIHFSMIQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRHDSEENTMHASTEEDEYNPDENGAILSTPQFNSFNFANMSNSMQSTPQEPTQFSCELCYKRFPLKTSLWKHKRAKHGIINPSATDTSVEVNNSRSSCTICKISFADKKSYYRHRKNVHKSSVQMCKICGKPLNSTLELYEHLKSDHARELLGYNSSQGPGKSQEMPQEVEVEFDDRETERPDPNAEYQARYPCDTCGKQFVGLLALQNHQCINQLPQQPQTFDCEICHKSYVSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKYEVVDASQLARVSHTTTSAPSPLTKRRLPPEVEVTVVNPNKKLRSDDSGEMDQSTNASGPSDDRYCRICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDAGEGGSNLQEEEGSACEVCGERFDDPDALNAHRETQHGDEESAGDSEDDGSAPPAPPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01202638;
- 90% Identity
- iTF_01204248; iTF_01202638; iTF_01205896;
- 80% Identity
- -