Pman006393.1
Basic Information
- Insect
- Pieris mannii
- Gene Symbol
- -
- Assembly
- GCA_029001895.1
- Location
- CM054833.1:392967-401378[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.0036 0.31 12.2 1.0 3 23 211 232 210 232 0.96 2 22 0.033 2.8 9.2 0.6 1 22 603 624 603 624 0.95 3 22 1.9 1.6e+02 3.6 0.1 1 23 665 688 665 688 0.86 4 22 0.064 5.4 8.3 0.5 3 21 699 717 697 718 0.94 5 22 0.0035 0.3 12.2 2.3 3 23 768 789 766 789 0.94 6 22 0.077 6.5 8.0 4.2 1 23 795 818 795 818 0.96 7 22 0.094 8 7.7 0.0 1 23 844 867 844 867 0.90 8 22 0.029 2.4 9.4 3.3 1 23 872 894 872 894 0.96 9 22 0.0024 0.2 12.8 0.3 1 23 900 923 900 923 0.95 10 22 0.00011 0.0091 17.0 1.6 1 23 936 958 936 958 0.97 11 22 0.00013 0.011 16.7 1.8 1 23 1006 1029 1006 1029 0.97 12 22 0.0029 0.25 12.5 1.8 1 23 1089 1112 1089 1112 0.96 13 22 0.0013 0.11 13.6 1.4 2 23 1132 1154 1131 1154 0.95 14 22 0.026 2.2 9.5 0.2 2 23 1160 1182 1159 1182 0.95 15 22 0.0074 0.63 11.2 0.2 1 21 1227 1247 1227 1248 0.95 16 22 0.0028 0.24 12.6 0.3 1 23 1258 1280 1258 1280 0.93 17 22 0.00058 0.049 14.7 0.3 3 23 1374 1395 1373 1395 0.92 18 22 1.3e-07 1.1e-05 26.1 1.1 3 23 1402 1422 1401 1422 0.98 19 22 0.00042 0.036 15.1 0.0 3 23 1441 1462 1440 1462 0.97 20 22 0.14 12 7.2 0.0 1 23 1485 1507 1485 1507 0.97 21 22 0.009 0.76 11.0 0.4 1 23 1513 1536 1513 1536 0.95 22 22 0.00019 0.016 16.2 0.4 1 23 1544 1567 1544 1567 0.96
Sequence Information
- Coding Sequence
- atgaGTGTTAATTATGATCGTGTTTGTAGACTATGCTTGTCATCTCGAGGTGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCTCGTCCTTGctgtaaaaattaatgattgcGTGTCCGTTCAGATTAACGAAAATGACGAATTGCCAACTAATGTGTGCAGAAAGTGTATGGATAATGTCAATAACTGGCACATATTCAAGTCAGTTTGTGAAAGGACTCAAAACAAACTACAATCTCTGATTAATAAAGAGAGCAGCCATCTAGAAGAGATTCATATTAAAACTGAACCAAATGAGGGTTTGTCTGATGGGGGCTATGATGATGGAGTGGTTATCAATGGAACGTATCCTGATGATGAAATTGCTGCATCCTCAAGCAAGGTCCAACCTGAAGGCCCACCAATATTGGCATCTTTGGGACTCACTCCGAGAAGCGATAAGGGCGTTGAAAGTGATAAAGATGAAGAGGAAATGGAAATGGAAGACGAGGAGATGAACGAGGATCAGACCTTTAATGCCCCCAACGTACCCGAAGTGTCGATCACCGTGATGCGTCCTTCGGGCGAAACATTACACTCGCGTCAAGGAATACAACAACTGGCGTCTAAAGACTGTCTCGTGTGCGGCCGCTCTTATAGATATTCTCACAATGCTCGGCGACACGAACTGACAGCTCACAGCTTCGATAggtatacaaacaaaataacggccaaaaaatcacacaaCCGGATGCAACCAAAATTGCGACCCAATCCGTTTAACCCTAAAGCACGGTTGATGCCGAATCCCATCAGCCATAAGATGCAACTCCAATTGCCCCAACTGCAACAATCTATCAAACTTATGCCTAAGAAAATAATCCCCCCGAAACCGATTCCCATCAGAAGCCTCAAGCCTTCGCAGAACAATTTGCCTTATCCCTTACGTATCAAGGCGCTCAAAGATTTGCAGATAAAAAAGAAGGAACCACAAATATTGAAAACGCTACTCACGACCAAACCGGAAGTACTGGTATCGGAGCCAGAAATTATTAACTCGGGGCCCGAAAGCCCCGAAACGTTGATATCCGAACCGGAGATAGCCTCATTCCAAGTCGAAACTATCTTATCTGAGCCCGATGGCTTTATCCACCACGACGACGATGATAAAGATGACGACGTCAAAAATCATAACCAAAATTACGACACTGTCGATATGGATTCAGATAATGAAATTGAAATCGCCCGTCAACCCGATAATGAGGAAGAAACAGAAGTTCGGCCCGAGACCGAAACAGGAGAGAATGATAACGAGGAAGAAAATGCGGGAGACGAACAACAGAACGATTTAGGAAAAGAAAATGAAGGTATAGATGAAAGTCAGGAGAAAGTTTCCGAAGAGCATCACGAGGATGGCGAAGAAGATGCAAAAGAGCCCGAAGAAGTGGACAAAGACGTCGATGACAGTCAAGAAAATTACGATTACGACCAAGACGGTGAACCTCCAATAGCTCCTGTCGTGGAAATAAACGAGGATATGCAAAACTCGTACAACAGCGAAGCTATTGAAAACGAAGAAGAGGAATTGGAAGATTACACCGCAGACGACGGTGGAGATGGAGAAGAAGATGCCAAAGAGCTGGATCCAGACAAACAATACGTTACTAAGACGCAGAGAGAATTCATTCTTAAGTATCGGGATATAATCGAACAAATCAATACTCAGAGGTGTCTCTGCTGCGACAGAGAACATCCCCGAAGAAAAGCGGTCATCCAGCATTTGCAAAAAAACGGGCACAAAGTCCCCAAGCACACGTGCTACAATTGCGTCGTTACATTTTCTCATATCGGTGCTCTGCTGAGCCACATGCGGTCGAACTCTTGCACCGATTTGTGGAAAATCATCTACAAGGAAGGTGGTATCACCGACGATCAAGTGATCGACGACGAGCCAAAGGTTAAGGTGCAATACAAAGACATTCTCAACGCGAGGTCTTACGCCTGTAAGCTGTGTCCCGCTAAATTCCAATTGAAACAACTCATAATGAAGCACGTGCTCGACGTCCACGAGGATGGCCAATCGCACGTAGTTCTCGCTTGCGTACATTGCGGCTCACGATTCAAAGATAAATCTATTTGGAAAAAGCACATCCGCAACGGTGAATGCACCGTGTACATCGCGTGCGATCTGTGCACTGATAAGTTTGGCAACGTGCAGGACTTTAACGAGCACGCCGTGGCCGTCCACGCCGGCAATTTCGATCCCGATAGTCAGAGCAAGTGTATCGACGGACGACCGACGGATTGCCCGATATGTGATAAGAAATGCTGCTCTTACCAAGCCCTCGTGAAACACTTGAAAGCGATTCACAACGAAGAGACCCCTCACTACTGCCAACACTGCGAGGCAAAGTTTGAACATGCCGCCGATCTCGACAAGCATACCTACACGGAACATTCTCTCAAGATGCTGGGAACTCATGCTTCCGAGCCGGACATGTCGCTGGTGAAAGAGGAAGCCGAGGAGTACCATTACTCGTGCACCGAATGTAATGCCATATTCGAGACGGTCGACGCGTGGACGGACCACCAGGTCGCCGAACACAATCAGATCGCGCATCACTGCGACCAATGTGAGAAGAAGTTCTTGCGGCCTTCCGAACTAGCCGAGCACAAAAACAGCCATTTGCGTGTCAAATTTTATCCGTGCAGTTTGTGCGGAAACTCTTATAGTAGTCCTCAGAAGCTGTCTCAACACGTCCAACAGACTCATCCCGGATCGAGCACCATAGGTGCGGGAGACACGGATTTCTTCTGCGATATTTGTGTCAGAACGTTCAAAAGCCGCCAGGCTTTCTCGAACCATATGCGTATTCACGCCAAAGTTCCATCCAATAAGAAAAGGCCGGGCGATTCCAGGAGTTTCGCTCCACAGATTATCGGGAAACCTATACACTTTTCAATGATCCAACCGGGATTCAGTCCGTTCAAACCGAACTGTAACGTGCCCAACGCTCCCTATTCTTGTGATATATGCGGAAAAGGATTTATgcataagaaaaatatttggaaACATAAGAAGGTGTTGCACGCGGATCTTTTGAACGACAGACACGACAGCGAGGAGAACACCATGCACGCTTCCACGGAGGAGGACGAATACAACCCAGACGAGAATGGGGCAATTCTATCGACACCCCAGTTTAACAGCTTCAACTTCGCCAACATGTCCAACTCCATGCAATCGACACCCCAAGAACCCACGCAGTTCTCGTGTGAATTGTGTTACAAACGCTTTCCGCTCAAGACCAGTCTGTGGAAGCACAAACGCGCCAAGCACGGCATCATCAACCCTTCGGCCACCGACACTTCGGTCGAGGTCAACAACAGTCGCTCTAGTTGTACCATTTGCAAAATATCTTTCGCCGACAAGAAGTCCTATTACCGACACAGGAAGAACGTCCACAAGTCGACGGTTCAAATGTGTAAAATATGCGGAAAGCCTTTGAACTCGACGCTGGAGCTGTACGAACACTTGAAATCCGACCACGCGCGAGAACTGTTAGGCTACAACTCCTCTCAAGGCCCCGGAAAGTCTCAGGAGATGACTCAGGAGGTGGAAGTGGAGTTCGAGGAGCGTGAGACCGAGCGTCCTGATCCCAACGCTGAGTACCAAGCCCGCTATCCGTGCGACACCTGTGGTAAGCAATTCGTGGGGCTGCTGGCGTTGCAGAACCACCAGTGTATCAATCAGCTGCCCCAACAGCCGCAAACTTTCGACTGTGAAATATGCCACAAGAGCTACATCTCCATCGCCGCGCTGAAGAGCCACCGCGGATGGCACCTGCGCTCCCCGGACGGAAAGGCGGCCGCGAACAACTCCGGCCTTTGGATGCCCCAGAACAAAGTGACCAGCAAAGTCAGCAAATACGAGGTCGTAGACGCCTCTCAGCTGGCACGCGTCTCCCACACCACGACATCGGCCCCCTCCCCCTTGACCAAGCGCAGGCTGCCCCCGGAGGTGGAGGTGACGGTCGTCAACCCAAATAAAAAGTTGCGATCCGACGACTCCGGAGAGATGGACCAGTCGACGAACGCGTCTGGGCCTTCGGACGACAGATACTGTAGGATATGCGACCGAGAGTTCACCAAGCGGGCGGCCTACCAGCGCCACATGGACGAGGTTCACCAACCGAACTCGGTGTTCTGCCCCGTCTGCGACAAGAGCTTCACGCGCAAGAGCACACTCATAGTGCACATGAAGAAGCACTATGACGCCGGGGAGGGTGGCTCGGCCAACCTGCAGGACGAGGAAGGTTCGGCCTGCGAGGTCTGCGGAGAGCGGTTCGACGACCTCGACGCCCTTAACGCGCATCGCGAGACGCAGCACGGTGACGAAGAGTCGGCCGGAGACTCGGACGACGACGGCTCCGCTCCGCCGGTGCAGCCCGGCGAGTTCACGTGCGCTCAGTGCGGGGACGGGGTGGCCACGCCCCGCGACCTCATCGCCCACCGCACCATGCACGCCACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTTGCGAGGGCCATCGACCTGTCGTCGCACACGCGGGCGAGGCACTCGGACAACGAGAAGGTGTTCTTTCCGTGCGCCATGTGTGACCGATTCTACATGAACAAGAAGAGCCTGCAACGGCACATCGAGATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPLVLAVKINDCVSVQINENDELPTNVCRKCMDNVNNWHIFKSVCERTQNKLQSLINKESSHLEEIHIKTEPNEGLSDGGYDDGVVINGTYPDDEIAASSSKVQPEGPPILASLGLTPRSDKGVESDKDEEEMEMEDEEMNEDQTFNAPNVPEVSITVMRPSGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITAKKSHNRMQPKLRPNPFNPKARLMPNPISHKMQLQLPQLQQSIKLMPKKIIPPKPIPIRSLKPSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDGFIHHDDDDKDDDVKNHNQNYDTVDMDSDNEIEIARQPDNEEETEVRPETETGENDNEEENAGDEQQNDLGKENEGIDESQEKVSEEHHEDGEEDAKEPEEVDKDVDDSQENYDYDQDGEPPIAPVVEINEDMQNSYNSEAIENEEEELEDYTADDGGDGEEDAKELDPDKQYVTKTQREFILKYRDIIEQINTQRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNSCTDLWKIIYKEGGITDDQVIDDEPKVKVQYKDILNARSYACKLCPAKFQLKQLIMKHVLDVHEDGQSHVVLACVHCGSRFKDKSIWKKHIRNGECTVYIACDLCTDKFGNVQDFNEHAVAVHAGNFDPDSQSKCIDGRPTDCPICDKKCCSYQALVKHLKAIHNEETPHYCQHCEAKFEHAADLDKHTYTEHSLKMLGTHASEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQIAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCSLCGNSYSSPQKLSQHVQQTHPGSSTIGAGDTDFFCDICVRTFKSRQAFSNHMRIHAKVPSNKKRPGDSRSFAPQIIGKPIHFSMIQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRHDSEENTMHASTEEDEYNPDENGAILSTPQFNSFNFANMSNSMQSTPQEPTQFSCELCYKRFPLKTSLWKHKRAKHGIINPSATDTSVEVNNSRSSCTICKISFADKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKSDHARELLGYNSSQGPGKSQEMTQEVEVEFEERETERPDPNAEYQARYPCDTCGKQFVGLLALQNHQCINQLPQQPQTFDCEICHKSYISIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKYEVVDASQLARVSHTTTSAPSPLTKRRLPPEVEVTVVNPNKKLRSDDSGEMDQSTNASGPSDDRYCRICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDAGEGGSANLQDEEGSACEVCGERFDDLDALNAHRETQHGDEESAGDSDDDGSAPPVQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01202638;
- 90% Identity
- iTF_01206744;
- 80% Identity
- -