Pnap001403.1
Basic Information
- Insect
- Pieris napi
- Gene Symbol
- -
- Assembly
- GCA_905475465.1
- Location
- FR997704.1:12796161-12806430[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0031 0.27 12.2 1.0 3 23 211 232 210 232 0.96 2 23 0.029 2.5 9.2 0.6 1 22 600 621 600 621 0.95 3 23 1.7 1.4e+02 3.6 0.1 1 23 662 685 662 685 0.86 4 23 0.019 1.6 9.7 0.3 3 21 696 714 694 715 0.94 5 23 3.1 2.7e+02 2.8 0.0 3 20 724 741 722 745 0.88 6 23 0.003 0.26 12.2 2.3 3 23 765 786 763 786 0.94 7 23 0.067 5.8 8.0 4.2 1 23 792 815 792 815 0.96 8 23 0.081 7 7.7 0.0 1 23 841 864 841 864 0.90 9 23 0.025 2.2 9.4 3.3 1 23 869 891 869 891 0.96 10 23 0.0021 0.18 12.8 0.3 1 23 897 920 897 920 0.95 11 23 9.3e-05 0.0081 17.0 1.6 1 23 933 955 933 955 0.97 12 23 0.00012 0.01 16.7 1.8 1 23 1003 1026 1003 1026 0.97 13 23 0.0016 0.13 13.2 1.1 1 23 1087 1110 1087 1110 0.96 14 23 0.0011 0.097 13.6 1.4 2 23 1130 1152 1129 1152 0.95 15 23 0.022 1.9 9.5 0.2 2 23 1158 1180 1157 1180 0.95 16 23 0.0064 0.56 11.2 0.2 1 21 1225 1245 1225 1246 0.95 17 23 0.002 0.17 12.8 0.3 1 23 1256 1278 1256 1278 0.93 18 23 0.0005 0.044 14.7 0.3 3 23 1372 1393 1371 1393 0.92 19 23 1.2e-07 1e-05 26.1 1.1 3 23 1400 1420 1399 1420 0.98 20 23 0.00052 0.045 14.6 0.0 3 23 1439 1460 1438 1460 0.96 21 23 0.12 10 7.2 0.0 1 23 1483 1505 1483 1505 0.97 22 23 0.0078 0.67 11.0 0.4 1 23 1511 1534 1511 1534 0.95 23 23 0.00017 0.014 16.2 0.4 1 23 1542 1565 1542 1565 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTTAATTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGTGAATTACTGCCGATATTTCCTACCACCAGTTCGGATGACTCGGAACCTCTCGTCCTTGCTGTGAAAATTAATGATTGCGTGTCCGTTCAGATAAACGAAAATGACGAATTGCCAACTAATGTCTGCAGAAAGTGCTTGGATAATGTCAATAACTGGCACACATTCAAGTCAGTTTGTGAAAGGACACAAAACAAACTACAATCTCTGATTAATAAAGAGAGCAGCCATCTAGAAGAGATTCATATTAAAACTGAACCAAATGAGGGATTATCTGATGGGGGTTATGATGATGGAGTGGTTATTAACGGATCATATCCTGATGATGAAACAGCTGCATCCTCAAGCAAGATCCAACCTGAAGGCCCACCAATATTGGCGTCTTTGGGACTCACTCCGAGAAGTGATAAGGGTGTCGAAAGCGATAAAGATGAAGAGGAAATGGAAATGGAAGACGAGGAGATGAACGAGGATCAGGCCTTCAACGCCCCTAATGTACCCGAAGTGTCCATCACCGTGATGCGTCCTTCGGGCGAGACCTTACACTCGCGTCAAGGAATACAACAACTGGCGTCTAAAGACTGTCTCGTGTGCGGCCGCTCTTATAGATATTCTCACAATGCCAGGCGACACGAACTGACAGCTCACAGCTTCGATAGATATACAAACAAAATAACGCCTAAAAAATCACACAACCGGATGCAACCTAAATTGCGACCCAACCCGTTTAACCCTAAAGCACGGTTGATGCCGAATCCCATCAGCCATAAGATGCAACTCCAGCTGCCCCAACTACAACAATCTATCAAACTTATGCCTAAGAAAATAATTCCACCGAAACCGATTCCCATCAGAAGCCTCAAGCCTTCGCAGAACAATTTGCCTTATCCCTTGCGTATCAAGGCGCTTAAAGATTTACAAATTAAAAAGAAGGAACCGCAAATATTGAAAACGCTACTCACGACCAAACCGGAAGTTCTGGTGTCGGAGCCAGAAATTATTAACTCGGGGCCCGAAAGCCCCGAAACCTTGATATCCGAACCGGAGATTGCCTCATTCCAAGTCGAAACTATCTTGTCCGAGCCCGATGGCTTCATCCACCAAAACGACGGCGATAAAGATGACGACGTCCAAAATCATAACCAGAATTACGACACGGTCGATATGGATTCAGAAAATGAAATTGAAATCGCGCGTCAACCCGATAATGAGGAAGAATCTGAAGTTAGGCCCGAGAACGAAGCGGAAGACGAGGAAGAAAACGCTGGAGACGAACAACAGAACGATTTAGGAAAAGAAAATGAAGGTATAGATGAAAGTCGGGAGAAAGTATCTGAAGACCCTCACGAGGATGGCGAAGAAGATGCAAAAGAACCCGAAGAAACGGACAAAGACGTCGATGACAGTCAAGAAAATTACGAATACGACCAAGACGGTGACCCTCCGATAGCCCCTGTCGTGGAAATAAACGAGGATATGCAAAATTCGTACAACAGCGAAGCTATTGAAAACGAAGAAGAGGAATTGGAAGATTACGCCGCGGACGACGGTGGAGATGGAGAAGAAGAGGCCAAAGAGCTGGATCCGGACAAACAATACGTAACTAAGACGCAAAGAGAATTCATTCTCAAGTATCGGGACATAATCGAACAAATCAATACCCAGAGGTGTCTCTGCTGCGATAGAGAACATCCCCGAAGAAAAGCGGTCATCCAGCATCTGCAAAAAAACGGGCACAAAGTCCCCAAGCACACGTGCTACAATTGCGTCGTTACATTTTCTCATATCGGCGCTCTGCTGAGCCACATGCGGTCGAACTCGTGCACCGATTTGTGGAAAATCATCTACAAGGAAGGCGGCGTCACCGACGATCAAGTGATCGACGACGAGCCAAAGGTTAAAGTGCAATACAAAGACATTCTCAACGCGAGGTCTTACGCCTGCAAGCTGTGTCCCGCTAAGTTCCAATTGAAACAATTGATAATGAAGCACGTGCTCGACGTGCACGAGGATGGCCAATCGCACGTCGTTCTCGCGTGCGTACATTGCGGCGCACGATTCAAAGATAAATCTATTTGGAAGAAACACATCCGCAACGGCGAGTGCACCGTGTACATCGCGTGCGATCTGTGCACCGAGAAGTTTGGCAACGTGCAGGACTTTAACGAGCACGCCGTGGCCGTCCACGCCGGCAATTTCGATCCCGACAGTCAGAGCAAGTGCATCGACGGGCGACCGACGGATTGCCCGATATGTGATAAGAAATGCTGCTCTTATCAGGCCCTCGTGAAACATTTGAAAGCTATTCACAACGAAGAGACCCCCCACTACTGCCAACACTGCGAGGCGAAGTTCGAACACGCCGCCGATCTCGACAAGCACACCTACACGGAACACTCTCTCAAGATGCTGGGAACTCATGCCTCCGAGCCGGACATGTCGCTGGTGAAAGAAGAAGCCGAGGAGTACCATTACTCGTGCACCGAATGTAACGCCATATTCGAGACGGTCGACGCGTGGACCGACCACCAGGTCGCCGAACACAACCAAGTCGCGCATCACTGCGACCAATGTGAGAAGAAATTCTTGCGGCCCTCCGAACTGGCCGAGCACAAAAACAGCCACTTGCGAGTCAAATTCTATCCGTGCAGTTTGTGCGGAAACTCTTACAGTAGTCCTCAGAAGCTGTCTCAACACGTCCAACAGACTCATCCCGGATCGAGCACCGTAGGCGCGGGAGACACAGATTTCTTCTGCGATATTTGTGTCAGAACATTCAAAAGCCGCCAGGCTTTCTCGAACCATATGCGTATTCACGCCAAAGTACCGTCCAACAAGAAAAGGCCGGGCGATTCGAGGAGTTTCGCTCCGCAGATTATCGGAAAACCGATACACTTTTCGATGATCCAACCGGGATTCAGTCCGTTCAAACCGAACTGTAACGTGCCCAACGCTCCCTATTCTTGTGATATATGCGGAAAAGGGTTTATGCATAAGAAAAATATTTGGAAGCATAAGAAGGTGTTGCACGCGGACCTTTTGAACGACAGACACAACGACAGCGAGGAGAACACCATGCACGCCTCCACGGAGGAGGACGAGTACAACCCCGACGAGAACGGGGCCATTCTGTCGACACCTCAGTTTAACAGTTTCAACTTCGCCAACATGACCAACTCCATGCAATCGACGCCCCAAGAACCCATGCAGTTCTCGTGCGAATTATGTTACAAACGCTTTCCGCTCAAGGCCAGCCTGTGGAAGCACAAACGCGCCAAGCACGGCATCATCAACCCTTCGGCCACCGACACTTCGGTCGAGGTCAACAACAGTCGCTCCAGTTGTACCATTTGCAAAATATCTTTCGCCGACAAGAAATCCTATTACCGACACAGGAAGAACGTCCACAAGTCGACGGTTCAAATGTGTAAGATATGCGGAAAGCCGTTGAACTCGACGCTGGAGTTGTACGAACACTTGAAATCCGATCACGCGCGAGAACTGTTAGGCTACAACTCCTCTCAAGGCCCCGGAAAGTCTCAGGAGATGACTCAGGAGGTGGAAGTGGAGTTCGAGGAGCGAGAGACCGAGCGCCCCGACCCCAACGCCGAGTACCAAGCCCGCTATCCGTGCGACACCTGCGGGAAGCAATTCGTGGGGTTGCTGGCGCTGCAGAACCACCAGTGCATCAATCAGCTGCCCCAGCAGCCGCAAACTTTTGACTGTGAAATATGCCACAAGAGCTACGTCTCGATCGCCGCGCTGAAGAGCCACCGCGGGTGGCATCTGCGCTCCCCGGACGGAAAGGCGGCCGCGAACAACTCGGGCCTTTGGATGCCCCAGAACAAAGTGACCAGCAAGGTCAGCAAATACGAAGTGGTCGACGCCTCTCAGCTGGCCCGCGTCTCCCACACCACGACGTCGGCCCCCTCCCCCCTGACCAAGCGCAGGCTGCCTCCGGAGGTCGAGGTGACGGTCGTCAACCCGAATAAGAAGTTGCGATCCGACGACTCCGGAGAGATGGACCAGTCGACGAACGCGTCCGGGCCTTCGGACGACAGATACTGTAGGATATGCGACCGAGAGTTCACGAAGCGGGCGGCCTACCAGCGCCACATGGACGAGGTGCACCAACCGAACTCGGTGTTCTGCCCCGTCTGCGACAAGAGCTTCACGCGCAAGAGCACTCTCATAGTGCACATGAAGAAGCACTACGACGCCGGGGAGGGCGGCTCGGCCAACCTGCAGGACGAGGAGGGCTCGGCCTGCGAGGTCTGCGGGGAGCGCTTCGACGACCTCGACGCCCTGAACGCGCACCGCGACACGCAGCACGGCGACGAGGAGTCGGCCGGAGACTCGGAGGACGACGGCTCCGCTCCTCCGGCGCAGCCCGGCGAGTTCACGTGCGCCCAGTGCGGGGACGGGGTGGCCACGCCCCGCGACCTCATCGCCCACCGCACCATGCACGCCACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCGCGAGGGCCATCGATCTGTCTTCGCACACGCGGGCGAGGCACTCGGACAACGAGAAGGTGTTCTTTCCGTGCGCCATGTGCGACCGGTTCTACATGAACAAGAAGAGCCTGCAGCGGCACATCGAGATGGCTCACTGA
- Protein Sequence
- MSVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPLVLAVKINDCVSVQINENDELPTNVCRKCLDNVNNWHTFKSVCERTQNKLQSLINKESSHLEEIHIKTEPNEGLSDGGYDDGVVINGSYPDDETAASSSKIQPEGPPILASLGLTPRSDKGVESDKDEEEMEMEDEEMNEDQAFNAPNVPEVSITVMRPSGETLHSRQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITPKKSHNRMQPKLRPNPFNPKARLMPNPISHKMQLQLPQLQQSIKLMPKKIIPPKPIPIRSLKPSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDGFIHQNDGDKDDDVQNHNQNYDTVDMDSENEIEIARQPDNEEESEVRPENEAEDEEENAGDEQQNDLGKENEGIDESREKVSEDPHEDGEEDAKEPEETDKDVDDSQENYEYDQDGDPPIAPVVEINEDMQNSYNSEAIENEEEELEDYAADDGGDGEEEAKELDPDKQYVTKTQREFILKYRDIIEQINTQRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNSCTDLWKIIYKEGGVTDDQVIDDEPKVKVQYKDILNARSYACKLCPAKFQLKQLIMKHVLDVHEDGQSHVVLACVHCGARFKDKSIWKKHIRNGECTVYIACDLCTEKFGNVQDFNEHAVAVHAGNFDPDSQSKCIDGRPTDCPICDKKCCSYQALVKHLKAIHNEETPHYCQHCEAKFEHAADLDKHTYTEHSLKMLGTHASEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCSLCGNSYSSPQKLSQHVQQTHPGSSTVGAGDTDFFCDICVRTFKSRQAFSNHMRIHAKVPSNKKRPGDSRSFAPQIIGKPIHFSMIQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRHNDSEENTMHASTEEDEYNPDENGAILSTPQFNSFNFANMTNSMQSTPQEPMQFSCELCYKRFPLKASLWKHKRAKHGIINPSATDTSVEVNNSRSSCTICKISFADKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKSDHARELLGYNSSQGPGKSQEMTQEVEVEFEERETERPDPNAEYQARYPCDTCGKQFVGLLALQNHQCINQLPQQPQTFDCEICHKSYVSIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKYEVVDASQLARVSHTTTSAPSPLTKRRLPPEVEVTVVNPNKKLRSDDSGEMDQSTNASGPSDDRYCRICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDAGEGGSANLQDEEGSACEVCGERFDDLDALNAHRDTQHGDEESAGDSEDDGSAPPAQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01202638;
- 90% Identity
- iTF_01206744;
- 80% Identity
- -