Pbra015815.1
Basic Information
- Insect
- Pieris brassicae
- Gene Symbol
- -
- Assembly
- GCA_905147105.1
- Location
- LR989937.1:11371005-11381096[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0029 0.24 12.2 1.0 3 23 177 198 176 198 0.96 2 23 0.026 2.2 9.2 0.6 1 22 569 590 569 590 0.95 3 23 1.5 1.3e+02 3.6 0.1 1 23 631 654 631 654 0.86 4 23 0.051 4.2 8.3 0.5 3 21 665 683 663 684 0.94 5 23 2.9 2.4e+02 2.8 0.0 3 20 693 710 691 714 0.88 6 23 0.0028 0.23 12.3 2.3 3 23 734 755 732 755 0.94 7 23 0.061 5 8.0 4.2 1 23 761 784 761 784 0.96 8 23 0.074 6.2 7.8 0.0 1 23 810 833 810 833 0.90 9 23 0.023 1.9 9.4 3.3 1 23 838 860 838 860 0.96 10 23 0.0019 0.16 12.8 0.3 1 23 866 889 866 889 0.95 11 23 8.6e-05 0.0071 17.0 1.6 1 23 902 924 902 924 0.97 12 23 0.00011 0.0087 16.7 1.8 1 23 972 995 972 995 0.97 13 23 0.0023 0.19 12.5 1.8 1 23 1055 1078 1055 1078 0.96 14 23 0.001 0.085 13.6 1.4 2 23 1098 1120 1097 1120 0.95 15 23 0.021 1.7 9.5 0.2 2 23 1126 1148 1125 1148 0.95 16 23 0.0059 0.49 11.2 0.2 1 21 1193 1213 1193 1214 0.95 17 23 0.0022 0.18 12.6 0.3 1 23 1224 1246 1224 1246 0.93 18 23 0.00046 0.038 14.7 0.3 3 23 1340 1361 1339 1361 0.92 19 23 1.1e-07 8.8e-06 26.2 1.1 3 23 1368 1388 1367 1388 0.98 20 23 0.00019 0.016 15.9 0.0 3 23 1407 1428 1406 1428 0.97 21 23 0.11 9.1 7.2 0.0 1 23 1451 1473 1451 1473 0.97 22 23 0.0071 0.59 11.0 0.4 1 23 1479 1502 1479 1502 0.95 23 23 0.00015 0.013 16.2 0.4 1 23 1510 1533 1510 1533 0.96
Sequence Information
- Coding Sequence
- ATGGCGTTGGAAGCGAGCGTATTGATTTATCTAGAGCAGATAAACGAAAATGACGAATTGCCAACTAATGTCTGCAGAAAATGCATGGATAATGTCAATAACTGGCACATATTCAAGTCAGTTTGTGAAAGGACACAAAACAAACTACAATCTCTGATTAATAATGAGAGCAGCCATCTAGAAGAGATTCATATTAAAACTGAACCAAATGAGGGATTATCTGATGGAGGCTATGATGATGGAGTGGTTATCAATGGATCATATCCTGATGATGAAACAGCTGCATCCTCAAGCAAGATTCAACCTGAAGGCCCACCAATATTGGCATCTTTGGGACTCACTCCGAGAAGTGATAAGGGTGTCGAAAGCGATAAAGATGAAGAGGAAATGGAAATGGAAGACGAGGAGATGAACGAGGATCAGGCTTTTAATGCCCCTAATGTACCCGAAGTGTCCATCACCGTGATGCGTCCTTCGGGCGAGACCTTACACGCGCGTCAAGGAATCCAACAACTGGCGTCTAAAGACTGTCTCGTGTGCGGCCGCTCTTATAGATATTCTCACAATGCCAGGCGACATGAACTGACAGCTCACAGCTTCGATAGGTATACAAACAAAATAACGGCCAAAAAATCACATAACCGGATGCAACCGAAATTGCGACCCAACCCATTTAATCCTAAAGCACGGTTGATGCCGAATCCCATCAGCCATAAGATGCAACTCCAACTGCCCCAACTACAACAATCTATCAAACTTATGCCTAAGAAAATAATCCCACCGAAACCGATTCCTATCAGGAGCCTCAAGCCTTCGCAGAACAGTTTGCCTTATCCTTTACGTATCAAAGCGCTTAAAGATTTGCAAATTAAAAAGAAGGAACCTCAAATATTGAAAACGCTACTCACGACCAAACCGGAGGTTTTGGTATCTGAGCCAGAAATTATTAACTCGGGGCCCGAAAGCCCCGAAACGTTGATATCCGAACCGGAGATTGCCTCATTCCAAGTCGAAACTATCTTGTCTGAGCCCGATGGATTCATCAACCAAGACGACGCCGATAAAGAGGACGACGTCCAAAATCATAACCAGAATTACGACACGGTCGATATGGACTCAGAAAATGAAATTGAAATCGCCCGTCAACCTGATAATGAGGAAGAAACTGAAGTTCGGCCCGAGAACGAAGCAGAAGAAAACTATAACGAGGAAGAAAATGCGGGAGACGAGCAACAGAATGATTTAGGCAAAGAAAATGATGGTATCGATGAAAGTCAGGAGAAAGTATCCGAAGAGCATCACGAGGATGGCGAAGAAGATGCAAAAGAACCCGAAGAAGTGGACAAAGACGTCGATGACAGTCAAGAAAATTATGAATACGACCAAGACGGTGACCCTCCAATAGCCCCTGTCGTGGAAATAAACGAAGATATACAAAATTCGTACAACAGCGAAGCTATTGAGAACGAAGAAGAGGAATTGGAAGATTACACCGCCGACGACGGTGGAGATAGAGAAGAAGAGGCCAAAGAGCTGGATCCGGACAAACAATACGTTACGAAGACGCAAAGAGAATTCATACTCAAATATCGGGACATAATCGAACAAATCAATACGCAGAGATGTCTCTGCTGCGATAGAGAACATCCTCGTAGAAAAGCGGTCATCCAGCATTTGCAAAAAAACGGGCACAAAGTCCCCAAGCACACGTGCTACAATTGCGTCGTTACATTTTCTCATATCGGTGCTCTGCTGAGCCACATGCGGTCGAACTCTTGCACAGATTTGTGGAAAATCATCTACAAGGAAGGCGGCATCACCGACGATCAAGTGATCGACGACGAGCCAAAGGTTAAAGTGCAATACAAAGACATTCTCAACGCGAGGTCTTACGCCTGTAAGCTGTGTCCAGCTAAATTCCAATTAAAACAACTGATAATGAAGCACGTGCTCGACGTCCACGAGGATGGCCAATCGCACGTAGTTCTCGCGTGCGTACATTGCGGCTCACGATTCAAAGATAAATCTATTTGGAAGAAGCACATCCGCAACGGCGAATGCACCGTGTACATCGCGTGCGATCTGTGCACCGAGAAGTTTGGCAACGTGCAGGACTTTAACGAGCACGCCGTGGCCGTCCACGCCGGCAATTTCGATCCCGACAGTCAGAGCAAGTGTATCGACGGACGACCGACGGATTGCCCGATATGTGATAAGAAATGCTGCTCTTATCAGGCCCTCGTGAAACATTTGAAAGCTATTCACAACGAAGAGACCCCCCACTACTGCCAACACTGCGAGGCAAAGTTCGAACATGCCGCCGATCTCGACAAGCATACCTACACGGAACATTCTCTCAAGATGCTGGGAACTCATGCCTCGGAGCCGGACATGTCGCTGGTGAAAGAAGAAGCTGAGGAGTACCATTACTCGTGCACCGAATGTAATGCCATATTCGAGACGGTCGACGCGTGGACCGACCACCAGGTCGCTGAACACAACCAGGTCGCGCATCACTGCGACCAATGTGAGAAGAAATTCTTGCGGCCCTCCGAACTGGCCGAGCACAAAAACAGCCACTTGCGTGTCAAATTCTATCCGTGCAGTTTGTGCGGAAACTCTTACAGTAGTCCTCAGAAGCTGTCTCAACACGTCCAACAGACTCATCCCGGATCGAGCACCATAGGTGCGGGAGATACAGATTTCTTCTGCGACATATGTGTCAGAACATTTAAAAGCCGCCAGGCATTCTCGAATCATATGCGTATTCACGCCAAAGTTCCATCCAATAAGAAAAGGCCGGGCGATTCCAGGAGTTTTGCTCCACAGATTATCGGTAAACCGATTCATTTTTCAATGATCCAACCGGGATTCAGTCCGTTCAAACCGAACTGTAACGTGCCCAACGCTCCCTATTCTTGTGATATTTGCGGAAAAGGTTTTATGCATAAGAAAAATATTTGGAAGCATAAGAAGGTGTTGCACGCGGACCTTTTGAACGACAGACACGACAGCGAGGAGAACACCATGCACGCTTCCACGGAGGAGGACGAATACAACCCCGACGAGAATGGGGCTATTCTATCGACACCTCAGTTTAACAGTTTTAACTTCGCCAACATGACCAACTCCATGCAATCGACGCCCCAAGAACCCATGCAGTTCTCGTGCGAATTGTGTTACAAACGCTTTCCGCTCAAGACTAGTTTGTGGAAGCATAAACGCGCCAAGCACGGCATCATCAACCCTTCGGCCACCGACACTTCGGTCGAGGTCAACAACAGTCGCTCCAGTTGTACCATTTGCAAAATATCTTTCGCCGATAAGAAGTCCTATTACCGACACAGAAAGAACGTCCACAAGTCGACGGTTCAAATGTGTAAAATATGCGGAAAGCCATTGAACTCGACGCTGGAGCTGTACGAACACTTGAAATCCGACCACGCGCGAGAACTGTTAGGCTACAACTCCTCTCAAGGCCCCGGAAAGTCTCAGGAGATGACTCAGGAGGTGGAAGTGGAGTTCGAGGAGCGAGAGACTGAACGCCCCGATCCCAACGCCGAGTACCAAGCCCGCTATCCGTGCGACACCTGCGGAAAGCAATTCGTGGGTTTGCTGGCGTTGCAGAACCACCAGTGTATCAATCAGCTGCCCCAGCAGCCGCAAACTTTCGACTGCGAAATATGCCACAAAAGCTACATCTCAATCGCGGCGCTGAAGAGCCACCGCGGATGGCACCTGCGCTCCCCGGACGGAAAGGCGGCTGCCAACAACTCGGGCCTTTGGATGCCCCAGAACAAAGTGACCAGCAAAGTCAGCAAATACGAAGTCGTCGACGCCTCTCAGCTGGCCCGCGTCTCCCACACCACGACGTCGGCCCCCTCACCCTTGACCAAGCGCAGGCTGCCCCCGGAGGTCGAGGTGACGGTAGTCAACCCGAATAAGAAGTTGCGATCCGACGACTCTGGCGAGATGGACCAGTCGACGAACGCGTCCGGGCCTTCGGACGACAGATACTGTAGGATATGCGACCGAGAGTTCACCAAGCGGGCGGCCTACCAGCGCCACATGGACGAGGTTCACCAACCGAACTCGGTGTTCTGCCCCGTCTGCGACAAGAGCTTCACGCGCAAGAGCACACTCATAGTGCACATGAAGAAGCACTATGACGCCGGGGAGGGCGGTTCGGCCAACCTGCAGGACGAGGAGGTTTCCGCCTGCGAGGTCTGCGGGGAGCGCTTCGACGACGCCGACGCACTGAACGCGCACCGCGAGACGCAGCACGGCGACGAAGAGTCGGCCGGAGACTCGGAGGACGACGGCTCCGCTCCGCCGGCGCAGCCCGGCGAGTTCACTTGCGCACAGTGCGGGGACGGGGTGGCCACGCCACGCGACCTCATCGCCCACCGCACCATGCACGCCACGCCCACCAAGTTCTTCTGCAACATCTGCAAGGTGTACTTCGCAAGGGCCATCGATCTCTCTTCGCACACGCGGGCCAGGCACTCGGACAACGAGAAGGTGTTCTTTCCGTGCGCCATGTGCGACCGATTCTACATGAACAAGAAGAGCCTGCAGCGGCACATCGAAATGGCTCACTGA
- Protein Sequence
- MALEASVLIYLEQINENDELPTNVCRKCMDNVNNWHIFKSVCERTQNKLQSLINNESSHLEEIHIKTEPNEGLSDGGYDDGVVINGSYPDDETAASSSKIQPEGPPILASLGLTPRSDKGVESDKDEEEMEMEDEEMNEDQAFNAPNVPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKITAKKSHNRMQPKLRPNPFNPKARLMPNPISHKMQLQLPQLQQSIKLMPKKIIPPKPIPIRSLKPSQNSLPYPLRIKALKDLQIKKKEPQILKTLLTTKPEVLVSEPEIINSGPESPETLISEPEIASFQVETILSEPDGFINQDDADKEDDVQNHNQNYDTVDMDSENEIEIARQPDNEEETEVRPENEAEENYNEEENAGDEQQNDLGKENDGIDESQEKVSEEHHEDGEEDAKEPEEVDKDVDDSQENYEYDQDGDPPIAPVVEINEDIQNSYNSEAIENEEEELEDYTADDGGDREEEAKELDPDKQYVTKTQREFILKYRDIIEQINTQRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFSHIGALLSHMRSNSCTDLWKIIYKEGGITDDQVIDDEPKVKVQYKDILNARSYACKLCPAKFQLKQLIMKHVLDVHEDGQSHVVLACVHCGSRFKDKSIWKKHIRNGECTVYIACDLCTEKFGNVQDFNEHAVAVHAGNFDPDSQSKCIDGRPTDCPICDKKCCSYQALVKHLKAIHNEETPHYCQHCEAKFEHAADLDKHTYTEHSLKMLGTHASEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNSHLRVKFYPCSLCGNSYSSPQKLSQHVQQTHPGSSTIGAGDTDFFCDICVRTFKSRQAFSNHMRIHAKVPSNKKRPGDSRSFAPQIIGKPIHFSMIQPGFSPFKPNCNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRHDSEENTMHASTEEDEYNPDENGAILSTPQFNSFNFANMTNSMQSTPQEPMQFSCELCYKRFPLKTSLWKHKRAKHGIINPSATDTSVEVNNSRSSCTICKISFADKKSYYRHRKNVHKSTVQMCKICGKPLNSTLELYEHLKSDHARELLGYNSSQGPGKSQEMTQEVEVEFEERETERPDPNAEYQARYPCDTCGKQFVGLLALQNHQCINQLPQQPQTFDCEICHKSYISIAALKSHRGWHLRSPDGKAAANNSGLWMPQNKVTSKVSKYEVVDASQLARVSHTTTSAPSPLTKRRLPPEVEVTVVNPNKKLRSDDSGEMDQSTNASGPSDDRYCRICDREFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLIVHMKKHYDAGEGGSANLQDEEVSACEVCGERFDDADALNAHRETQHGDEESAGDSEDDGSAPPAQPGEFTCAQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARAIDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01204248; iTF_01205896; iTF_01206744;
- 90% Identity
- iTF_01206744;
- 80% Identity
- -