Basic Information

Insect: Pieris macdunnoughii
Gene Symbol: -
Assembly: GCA_905332375.1
Location: CAJOBZ010000008.1:7384557-7398151[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.4e-05 0.004 17.4 1.5 1 23 424 446 424 446 0.96

2 18 0.0011 0.065 13.6 1.0 1 20 452 471 452 474 0.94

3 18 0.0004 0.025 14.9 2.9 1 23 492 514 492 514 0.98

4 18 2.8e-05 0.0017 18.6 4.6 1 23 520 542 520 542 0.99

5 18 2.6e-05 0.0016 18.7 5.3 1 23 548 570 548 570 0.97

6 18 7.1e-06 0.00044 20.5 7.9 1 23 576 598 576 598 0.97

7 18 5.2e-07 3.2e-05 24.0 3.3 1 23 604 626 604 626 0.97

8 18 7.6e-05 0.0047 17.2 6.7 1 23 632 654 632 654 0.97

9 18 0.00011 0.0067 16.7 6.5 1 23 660 682 660 682 0.97

10 18 3.6e-07 2.2e-05 24.5 1.9 1 23 688 710 688 710 0.98

11 18 7.2e-06 0.00044 20.4 7.7 1 23 716 738 716 738 0.98

12 18 1.3e-05 0.00082 19.6 7.8 1 23 744 766 744 766 0.98

13 18 7.1e-07 4.4e-05 23.6 6.5 1 23 772 794 772 794 0.98

14 18 2.3e-06 0.00014 22.0 6.0 1 23 800 822 800 822 0.98

15 18 7.8e-05 0.0048 17.2 8.9 1 23 828 850 828 850 0.96

16 18 1.1e-05 0.00067 19.9 4.2 1 23 856 878 856 878 0.98

17 18 0.0011 0.065 13.6 0.1 1 23 885 907 885 907 0.96

18 18 0.0075 0.46 10.9 7.3 1 23 916 938 916 938 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.4e-05	0.004	17.4	1.5	1	23	424	446	424	446	0.96
2	18	0.0011	0.065	13.6	1.0	1	20	452	471	452	474	0.94
3	18	0.0004	0.025	14.9	2.9	1	23	492	514	492	514	0.98
4	18	2.8e-05	0.0017	18.6	4.6	1	23	520	542	520	542	0.99
5	18	2.6e-05	0.0016	18.7	5.3	1	23	548	570	548	570	0.97
6	18	7.1e-06	0.00044	20.5	7.9	1	23	576	598	576	598	0.97
7	18	5.2e-07	3.2e-05	24.0	3.3	1	23	604	626	604	626	0.97
8	18	7.6e-05	0.0047	17.2	6.7	1	23	632	654	632	654	0.97
9	18	0.00011	0.0067	16.7	6.5	1	23	660	682	660	682	0.97
10	18	3.6e-07	2.2e-05	24.5	1.9	1	23	688	710	688	710	0.98
11	18	7.2e-06	0.00044	20.4	7.7	1	23	716	738	716	738	0.98
12	18	1.3e-05	0.00082	19.6	7.8	1	23	744	766	744	766	0.98
13	18	7.1e-07	4.4e-05	23.6	6.5	1	23	772	794	772	794	0.98
14	18	2.3e-06	0.00014	22.0	6.0	1	23	800	822	800	822	0.98
15	18	7.8e-05	0.0048	17.2	8.9	1	23	828	850	828	850	0.96
16	18	1.1e-05	0.00067	19.9	4.2	1	23	856	878	856	878	0.98
17	18	0.0011	0.065	13.6	0.1	1	23	885	907	885	907	0.96
18	18	0.0075	0.46	10.9	7.3	1	23	916	938	916	938	0.99

Sequence Information

Coding Sequence: aTGAATCCGGATCATCATAGTATTAATACTGGCGGTGGCCAGCCGCCTGGGAATTCTGAGTCACAGAATCAAAGAGTACAATCAGCTCAACAGCAAAGTATTACTCCTACGACTTCTGCAACAGATCTAAGGGTGAACTCTGCAGCTGTAAATGTCGCTTTGTCTAGCGTCGCAAAATATTGGGTGTTTACAAATTTGTTTCCCGGTCCAATACCTCAAGTTTCCGTATACGGTTTGCCAACAAGTACAAGGATTGAAAATGGGAAACCAGTACAGGATCTTGGACAGACCCATACAAGTATACTTAATGGAGACCCCAATATTATATTGGGTCACCACAGTGGACAATCACAGGTTACAGTCTCTGCCGGTGGCCAACAAATACCAATATCTCAAATTATCACAACCCAATCAGGACAAGGACatgAAACCCTAGTGGCTCACACCCAGCAACAAGAGATGTCAAGCCAGCAGTCTTCCAGTGGAACATCACAGGTACCCAATAGTCGGGTCGAGTTTGTTCAACACCATAACATTGATATGGTAAATTATGTGggcCATCATTCACAACATATCTTGCAACAGCAGTTAATAGCAGCCAGACCAGATCACTCCAACCAACAgATACAACTGACAGTAAGTGAAGATGGTATAGTAACTGTTGTAGAACCAGGAGGTGGGAAGATGATTGACAAAGATGAACTCCATGAAACCATCAAAATGCCCACAGATCACACTCATCTTACTGTGCATCAGCTGCAACAAATTGTTGGACATCATCAGGTCATAGACAGTGTTGTCCGCATAGAACAAGCGACTGGTGAACCAGCAAATATTCTTGTGACTCAAAACCCCGATGGTACAACTTCTATAGAAACGAGTGCAGTAGATCCTCTTCTGGTGAAAGATGAGAAGAATGTTGCCAAGATTGAATCGGCACAATTTGCTGCACCGGCCGACATAAAAGATATTAAGGGGATTGATTTAAAGAGTGTAAGTAGTATGGGAGTGGAAGGTGCAGTGGTAAAGATCTCGGCTGGTGCTGCTGACCATGACCTGCATGCCATGTACAAAGTGAATGTGGAAGACCTTTCTCAACTACTCGCCTATCACGAGGTCTTTGGGAAACTTAGCAATGAACAGCAAACACCTCAACAGCAGCAACAGCAACAACAGACACAACCCAATAAGCAGCCAGTTCTGTATGAAGTCGAACTAGAGGCGAGTACAAGTGCATCCATGTCTGAAGCAGAGGCGTCTCCTGGTCACCATGCTTGTGATATATGTgggaaaatatttcaatttcgaTATCAACTTATTGTTCACagacGGTACCATGGTGAAGGCAAACAATATCCATGTCAAGTGTGTGGCAACGCTTTTTCTAATCCAACGGAATTGTCTAAACATGGGAAATGTCATTTAGCTGGTGACCCAGCAGACAAATTGAAGCGTCTATCTCAAGACAAGCCTTACGCCTGCACAACTTGCCAAAAGACCTTCTGGCGGAAGGAACATCTTGACAACCATGTCAGAACACACACCGGGGAAACGCCATACAGATGCCAATATTGCGCAAAGACATTCACCCGTAAGGAGCACATGGTGAACCATGTTCGTAAACACACGGGCGAGACTCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAGCATTTTATGAACCACGTCATGTGGCATACGGGTGAAACGCCGCACCATTGCCAAATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAATGAACCATATGCGATCGCATGCGAACGACACACCGTTCCGATGCGAACAGTGCGGAAAGTCCTTCACCAGAAAGGAACACTTCACCAATCACATTCTGTGGCATTCTGGTGAAACACCGCATCGGTGCGACTTCTGTTCTAAGACTTTCACTCGAAAAGAACATTTGCTTAACCATGTTCGACAACATACGGGGGAATCCCCGCATCGGTGCAGTTTCTGTTCCAAATCATTTACGAGACGTGAACATCTCGTGAATCATGTGCGGCAACACACCGGCGAAACACCTTTCCAATGCGGCTACTGTCCTAAGGCGTTTACAAGGAAAGATCATTTAGTAAATCATGTCCGCCAACATACCGGGGAATCGCCACACAAGTGCTCATACTGCACCAAGTCCTTTACGCGCAAAGAGCACTTGACAAATCATGTTCGGCAACATACCGGCGAATCTCCTCATCGCTGTACGTTTTGCTCCAAGTCATTCACCAGGAAGGAACATCTCACTAACCATATAAgGCAACACACAGGGGAGACTCCCTTCAAATGTACATACTGCAACAAAGCATTCTCGCGAAAGGAACACCTCACGAATCACATGCACATACACACTGGGGAGACGCCGCACAAATGTCCTTTTTGCACCAAGACGTTTTCGAGGAAAGAACATTTAACTAATCATGTGCGGATACACACGGGCGAGTCGCCGCACCGTTGCGAATGTTGCGGCAAAACGTTCACCCGAAAGGAACATCTCAACAACCACATGCGACAGCACACTGGAGATAGCCCTTTCACGTGTAAAGCGTGCTCTAAGACATTCACCCAAAAGGAGCACCTAGTCTCACATAtgaaGTCACACGCTTGTAGCGACAAGCCGTTCGTTTGCGGCGAATGTGGAAAAGCATTCCCGCTCAAAGGCAATCTCCTTTTCCACGAGAGATCCCACTCGAAATCCGCCACGTCAAAAGTATTCAAATGTACCATATGTTCTAAAGAATTTATGTGCAAAGgtcATTTAACAACGCATCGTCGCACGCATACTGAGAACACGAATCAGGAAAATGCTGAAGACAACGATGTTTGTATGGAGGAATGTGGAAAACCGTTTGAGGCAGACCCCCTGGATGTTGATAGAAAACCGGATATTAGGCCTCCATCGGAAATGGAAGTGACCGAAAATTCAGTTCCTCAACCTAACACTGTGATGCAAGTGACTACTCAGCAAGTGCGTGCAACAGTCCCATCCAGCTCCACCAACGTCCCTACTGGCGCGTTTGCTCAGACGCAGCATCACACCGCCGTAGCGCATCACACCGTCACCGTTAACTACTAG
Protein Sequence: MNPDHHSINTGGGQPPGNSESQNQRVQSAQQQSITPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTSTRIENGKPVQDLGQTHTSILNGDPNIILGHHSGQSQVTVSAGGQQIPISQIITTQSGQGHETLVAHTQQQEMSSQQSSSGTSQVPNSRVEFVQHHNIDMVNYVGHHSQHILQQQLIAARPDHSNQQIQLTVSEDGIVTVVEPGGGKMIDKDELHETIKMPTDHTHLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAVDPLLVKDEKNVAKIESAQFAAPADIKDIKGIDLKSVSSMGVEGAVVKISAGAADHDLHAMYKVNVEDLSQLLAYHEVFGKLSNEQQTPQQQQQQQQTQPNKQPVLYEVELEASTSASMSEAEASPGHHACDICGKIFQFRYQLIVHRRYHGEGKQYPCQVCGNAFSNPTELSKHGKCHLAGDPADKLKRLSQDKPYACTTCQKTFWRKEHLDNHVRTHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLMNHMRSHANDTPFRCEQCGKSFTRKEHFTNHILWHSGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTFCSKSFTRKEHLTNHIRQHTGETPFKCTYCNKAFSRKEHLTNHMHIHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCECCGKTFTRKEHLNNHMRQHTGDSPFTCKACSKTFTQKEHLVSHMKSHACSDKPFVCGECGKAFPLKGNLLFHERSHSKSATSKVFKCTICSKEFMCKGHLTTHRRTHTENTNQENAEDNDVCMEECGKPFEADPLDVDRKPDIRPPSEMEVTENSVPQPNTVMQVTTQQVRATVPSSSTNVPTGAFAQTQHHTAVAHHTVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00771241;
90% Identity: iTF_01205894; iTF_00879016; iTF_01202636; iTF_01206741; iTF_01204247; iTF_00430839;
80% Identity: -