Basic Information

Insect: Pieris rapae
Gene Symbol: -
Assembly: GCA_905147795.1
Location: LR990590.1:4889545-4903815[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.2e-05 0.0048 17.5 1.5 1 23 417 439 417 439 0.96

2 18 0.001 0.079 13.6 1.0 1 20 445 464 445 467 0.94

3 18 0.00039 0.03 14.9 2.9 1 23 485 507 485 507 0.98

4 18 2.7e-05 0.0021 18.6 4.6 1 23 513 535 513 535 0.99

5 18 2.5e-05 0.002 18.7 5.3 1 23 541 563 541 563 0.97

6 18 6.8e-06 0.00053 20.5 7.9 1 23 569 591 569 591 0.97

7 18 5e-07 3.9e-05 24.0 3.3 1 23 597 619 597 619 0.97

8 18 7.3e-05 0.0057 17.2 6.7 1 23 625 647 625 647 0.97

9 18 0.00011 0.0081 16.7 6.5 1 23 653 675 653 675 0.97

10 18 3.5e-07 2.7e-05 24.5 1.9 1 23 681 703 681 703 0.98

11 18 6.9e-06 0.00054 20.4 7.7 1 23 709 731 709 731 0.98

12 18 1.3e-05 0.001 19.6 7.8 1 23 737 759 737 759 0.98

13 18 6.8e-07 5.3e-05 23.6 6.5 1 23 765 787 765 787 0.98

14 18 2.2e-06 0.00017 22.0 6.0 1 23 793 815 793 815 0.98

15 18 7.5e-05 0.0058 17.2 8.9 1 23 821 843 821 843 0.96

16 18 1e-05 0.00081 19.9 4.2 1 23 849 871 849 871 0.98

17 18 0.013 0.98 10.2 0.0 1 23 878 900 878 900 0.93

18 18 0.0072 0.56 11.0 7.3 1 23 909 931 909 931 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.2e-05	0.0048	17.5	1.5	1	23	417	439	417	439	0.96
2	18	0.001	0.079	13.6	1.0	1	20	445	464	445	467	0.94
3	18	0.00039	0.03	14.9	2.9	1	23	485	507	485	507	0.98
4	18	2.7e-05	0.0021	18.6	4.6	1	23	513	535	513	535	0.99
5	18	2.5e-05	0.002	18.7	5.3	1	23	541	563	541	563	0.97
6	18	6.8e-06	0.00053	20.5	7.9	1	23	569	591	569	591	0.97
7	18	5e-07	3.9e-05	24.0	3.3	1	23	597	619	597	619	0.97
8	18	7.3e-05	0.0057	17.2	6.7	1	23	625	647	625	647	0.97
9	18	0.00011	0.0081	16.7	6.5	1	23	653	675	653	675	0.97
10	18	3.5e-07	2.7e-05	24.5	1.9	1	23	681	703	681	703	0.98
11	18	6.9e-06	0.00054	20.4	7.7	1	23	709	731	709	731	0.98
12	18	1.3e-05	0.001	19.6	7.8	1	23	737	759	737	759	0.98
13	18	6.8e-07	5.3e-05	23.6	6.5	1	23	765	787	765	787	0.98
14	18	2.2e-06	0.00017	22.0	6.0	1	23	793	815	793	815	0.98
15	18	7.5e-05	0.0058	17.2	8.9	1	23	821	843	821	843	0.96
16	18	1e-05	0.00081	19.9	4.2	1	23	849	871	849	871	0.98
17	18	0.013	0.98	10.2	0.0	1	23	878	900	878	900	0.93
18	18	0.0072	0.56	11.0	7.3	1	23	909	931	909	931	0.99

Sequence Information

Coding Sequence: ATGAATCCGGATCATCATAGTATTAATACTGGAGGTGGCCAGCCGCCTGGAAATTCCGAGAATCAAAGAGTACAATCAGCTCAACAGCAGAGTATTACTCCTACGACTTCTGCAACAGACCTAAGGGTGAACTCCGCAGCTGTAAATGTTGCTTTGTCTAGCGTCGCGAAATATTGGGTGTTTACTAATTTGTTTCCCGGTCCAATACCTCAAGTTTCCGTATACGGATTGCCAACAAGTACTAGAATTGAAAATGGAAAACCTGTACAGGATCTTGGACAAACTCACACAAGTATTCTTAATGGAGACCCCAATATTATATTGGGTCACCATAGTGGACAACCACAGGTTACTGTCTCTGCTGGAGGACAACAAATACCAATTTCTCAAATCATCACAACCCAATCAGGACAAGGACATGAAACCCTAGTGGCTCACACACAGCAACAAGAGATGTCAAACCAGCAGTCTTCCAGTGGAACTTCACAGGTACCCAATAATCGGGTCGAGTTTGTTCAACACCATAACATTGATATGGGCCATCATTCACAACATATTTTGCAACAGCAGTTAATGGCGGCCAGACCAGATCATTCCAACCAACAGATACAACTGACAGTAAGTGAAGATGGTATAGTAACTGTTGTAGAACCAGGAGGTGGGAAGATGGTTGACAAAGATGAACTCCATGAAACCATCAAAATGCCTACAGATCACACTCATCTAACTGTGCATCAGTTGCAACAAATTGTTGGACATCATCAGGTCATAGACAGTGTTGTCCGCATAGAACAAGCAACGGGTGAACCAGCAAATATTCTTGTGACACAAAACCCTGATGGTACTACTTCTATAGAAACAAGTGCAGTAGATCCCCTTCTGATAAAAGATGAGAAGAATGTTACCAAGATTGAATCAGCACAATTTGCAACACCGGGTGACATTAAAGATATTAAGGGGATTGATTTAAAGAGTGTAAGCAGTATGGGAGTGGAAGGTGCAGTAGTAAAGATCTCGGCTGGTGCTGCTGACCATGACCTGCATGCCATGTACAAAGTGAATGTGGAGGATCTTTCTCAACTACTCGCCTATCACGAGGTCTTCGGGAAACTTAGTAATGAACAGCAAACGCCTCAACAGCAGCAACAACAACAACAGACGCAACCCAAGCAGCCAGTTCTGTATGAAGTTGAACTAGAGGCGAGTACAAGTGCATCCATGTCTGAAGCCGAGGCATCACCTGGTCATCATGCTTGTGATATCTGTGGAAAAATATTTCAATTTCGATATCAACTTATTGTTCACAGACGGTATCATGGTGAAGGCAAACAATATCCATGTCAAGTGTGTGGCAACGCTTTTTCAAATCCAACGGAATTGTCTAAACATGGGAAATGTCATTTAGCTGGTGACCCAGCAGACAAACTGAAGCGTCTATCTCAAGACAAGCCTTACGCATGCACAACTTGCCAAAAGACCTTCTGGCGGAAGGAACATCTTGACAACCATGTCAGAACACATACAGGGGAAACTCCATACAGATGCCAATACTGCGCAAAGACATTCACCCGCAAGGAGCACATGGTGAACCATGTTCGTAAACACACGGGCGAGACTCCACACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAGGAACATTTTATGAACCACGTTATGTGGCATACTGGTGAAACGCCGCACCATTGCCAAATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAATGAACCATATGCGATCGCATGCGAACGACACGCCGTTCCGATGCGAACAGTGCGGAAAGTCCTTCACCAGAAAGGAACACTTCACCAATCACATTCTGTGGCACTCTGGCGAGACACCGCATCGGTGCGACTTTTGTTCTAAGACTTTCACTCGAAAAGAACATTTGCTTAACCATGTTCGACAACATACGGGGGAATCCCCGCATCGGTGCAGTTTCTGTTCCAAATCGTTTACGAGACGTGAACATCTTGTAAATCATGTGCGGCAACACACCGGCGAAACACCTTTCCAATGCGGCTACTGTCCTAAGGCGTTTACAAGGAAAGATCATTTAGTAAATCATGTCCGTCAACATACCGGGGAATCACCACACAAGTGCTCATACTGCACCAAATCCTTTACGCGCAAAGAGCACTTGACAAACCATGTGCGGCAACATACCGGCGAATCTCCTCATCGCTGTACGTTTTGCTCCAAGTCATTCACACGGAAGGAACATCTCACCAACCATATAAGACAACACACAGGGGAGACTCCATTCAAATGTACATACTGCAATAAAGCGTTCTCGCGTAAGGAACACCTCACGAATCACATGCACATACACACTGGGGAGACGCCGCACAAGTGTCCTTTTTGCACCAAGACATTTTCGAGGAAAGAACACCTCACTAACCATGTGCGGATACACACGGGCGACTCGCCGCACCGTTGCGAATGTTGCGGCAAAACGTTTACCCGAAAGGAACATCTCAACAACCACATGCGACAGCACACTGGAGATAGCCCTTTCACATGTAAAGCGTGCTCTAAAACATTCACCCAAAAGGAGCACCTAGTCTCACATATGAAGTCACACGCCTGTAGCGACAAGCCGTTCGTTTGCGGCGAATGTGGAAAAGCATTCCCGCTCATAGGCAATCTCCTTTTCCACGAGAGGTCCCACTCAAAATCCGCCACGTCAAAAGTATTCAAGTGTACCATATGTTCTAAAGAATTTATGTGCAAAGGTCATTTGACAACGCATCGTCGCACGCATACTGAGAACACGAATCAGGAAAATGCTGAAGAAAACGATGTCTGTATGGAGGAATGTGTCAAACCCTTTGAGGCAGATCCCATGGAGGTGGATAGAAAACCAGATATTAGGCCTCCATCAGAAATGCAAGTGACCGAAAATTCAGTTCCTCAAAGTCAAGCTAACACTGTGATGCAAGTGACTACTCAGCAAGTGCGTGCAACAGTCCCATCCAGCGCCACCAACGTCCCTACTGGCACGTTTGCTCAGGCGCAGCAACACACCGCCGTAGCGCATCACACCGTCACCGTTAACTACTAG
Protein Sequence: MNPDHHSINTGGGQPPGNSENQRVQSAQQQSITPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTSTRIENGKPVQDLGQTHTSILNGDPNIILGHHSGQPQVTVSAGGQQIPISQIITTQSGQGHETLVAHTQQQEMSNQQSSSGTSQVPNNRVEFVQHHNIDMGHHSQHILQQQLMAARPDHSNQQIQLTVSEDGIVTVVEPGGGKMVDKDELHETIKMPTDHTHLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAVDPLLIKDEKNVTKIESAQFATPGDIKDIKGIDLKSVSSMGVEGAVVKISAGAADHDLHAMYKVNVEDLSQLLAYHEVFGKLSNEQQTPQQQQQQQQTQPKQPVLYEVELEASTSASMSEAEASPGHHACDICGKIFQFRYQLIVHRRYHGEGKQYPCQVCGNAFSNPTELSKHGKCHLAGDPADKLKRLSQDKPYACTTCQKTFWRKEHLDNHVRTHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLMNHMRSHANDTPFRCEQCGKSFTRKEHFTNHILWHSGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTFCSKSFTRKEHLTNHIRQHTGETPFKCTYCNKAFSRKEHLTNHMHIHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGDSPHRCECCGKTFTRKEHLNNHMRQHTGDSPFTCKACSKTFTQKEHLVSHMKSHACSDKPFVCGECGKAFPLIGNLLFHERSHSKSATSKVFKCTICSKEFMCKGHLTTHRRTHTENTNQENAEENDVCMEECVKPFEADPMEVDRKPDIRPPSEMQVTENSVPQSQANTVMQVTTQQVRATVPSSATNVPTGTFAQAQQHTAVAHHTVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00771241;
90% Identity: iTF_01203426;
80% Identity: -