Basic Information

Insect: Pieris brassicae
Gene Symbol: -
Assembly: GCA_905147105.1
Location: LR989935.1:6368900-6382077[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 6.3e-05 0.0052 17.4 1.5 1 23 420 442 420 442 0.96

2 18 0.001 0.086 13.6 1.0 1 20 448 467 448 470 0.94

3 18 0.00039 0.032 14.9 2.9 1 23 488 510 488 510 0.98

4 18 2.7e-05 0.0022 18.6 4.6 1 23 516 538 516 538 0.99

5 18 2.6e-05 0.0021 18.7 5.3 1 23 544 566 544 566 0.97

6 18 6.9e-06 0.00057 20.5 7.9 1 23 572 594 572 594 0.97

7 18 5e-07 4.2e-05 24.0 3.3 1 23 600 622 600 622 0.97

8 18 7.4e-05 0.0061 17.2 6.7 1 23 628 650 628 650 0.97

9 18 0.00011 0.0088 16.7 6.5 1 23 656 678 656 678 0.97

10 18 3.6e-07 2.9e-05 24.5 1.9 1 23 684 706 684 706 0.98

11 18 7e-06 0.00058 20.4 7.7 1 23 712 734 712 734 0.98

12 18 1.3e-05 0.0011 19.6 7.8 1 23 740 762 740 762 0.98

13 18 6.9e-07 5.7e-05 23.6 6.5 1 23 768 790 768 790 0.98

14 18 2.2e-06 0.00018 22.0 6.0 1 23 796 818 796 818 0.98

15 18 7.6e-05 0.0063 17.2 8.9 1 23 824 846 824 846 0.96

16 18 2.5e-05 0.0021 18.7 3.4 2 23 853 874 852 874 0.97

17 18 0.001 0.085 13.6 0.1 1 23 881 903 881 903 0.96

18 18 0.0073 0.6 10.9 7.3 1 23 912 934 912 934 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	6.3e-05	0.0052	17.4	1.5	1	23	420	442	420	442	0.96
2	18	0.001	0.086	13.6	1.0	1	20	448	467	448	470	0.94
3	18	0.00039	0.032	14.9	2.9	1	23	488	510	488	510	0.98
4	18	2.7e-05	0.0022	18.6	4.6	1	23	516	538	516	538	0.99
5	18	2.6e-05	0.0021	18.7	5.3	1	23	544	566	544	566	0.97
6	18	6.9e-06	0.00057	20.5	7.9	1	23	572	594	572	594	0.97
7	18	5e-07	4.2e-05	24.0	3.3	1	23	600	622	600	622	0.97
8	18	7.4e-05	0.0061	17.2	6.7	1	23	628	650	628	650	0.97
9	18	0.00011	0.0088	16.7	6.5	1	23	656	678	656	678	0.97
10	18	3.6e-07	2.9e-05	24.5	1.9	1	23	684	706	684	706	0.98
11	18	7e-06	0.00058	20.4	7.7	1	23	712	734	712	734	0.98
12	18	1.3e-05	0.0011	19.6	7.8	1	23	740	762	740	762	0.98
13	18	6.9e-07	5.7e-05	23.6	6.5	1	23	768	790	768	790	0.98
14	18	2.2e-06	0.00018	22.0	6.0	1	23	796	818	796	818	0.98
15	18	7.6e-05	0.0063	17.2	8.9	1	23	824	846	824	846	0.96
16	18	2.5e-05	0.0021	18.7	3.4	2	23	853	874	852	874	0.97
17	18	0.001	0.085	13.6	0.1	1	23	881	903	881	903	0.96
18	18	0.0073	0.6	10.9	7.3	1	23	912	934	912	934	0.99

Sequence Information

Coding Sequence: ATGAATCCGGATCATCATAGTATTAATAATGGCGGTGGCCAGCCGCCTGGGAATTCTGAGTCACAGAATCAAAGAGTACAATCAGCTCAACAGCAAAGTATTGCTCCTACAACTTCTGCAACAGACCTAAGGGTGAACTCTGCAGCTGTAAATGTCGCTTTGTCTAGCGTCGCAAAATATTGGGTGTTTACAAATTTGTTTCCCGGTCCAATACCTCAAGTTTCCGTATACGGTTTGCCAACGAGTACTAGGATTGAAAATGGAAAACCAGTACAGGATCTTGGACAGACCCATACAAGTATACTTAATGGAGACCCCAATATTATATTGGGTCACCACAGTGGACAACCACAGGTTACAGTCTCTGCCGGAGGCCAACAAATACCAATATCGCAAATCATCACAACCCAATCAGGACAAGGACATGAAACCCTAGTGGCACACACCCAGCAACAAGAGATGTCAAGCCAGCAGTCTTCCAGTGGAACATCACAGGTACCCAATAATCGGGTCGAGTTTGTTCAACACCATAACATTGATATGGGCCATCATTCACAACATATTTTGCAACAGCAGTTAATGGCGGCCAGACCAGATCACTCCAATCAACAGATACAACTGACAGTCAGTGAAGATGGTATAGTAACTGTTGTAGAACCAGGAGGTGGGAAGATGGTTGACAAAGATGATCTCCATGAAACCATCAAAATGCCCACAGATCATACCCATCTTACTGTGCATCAGTTGCAACAAATTGTTGGACATCATCAGGTCATAGACAGTGTTGTCCGCATAGAACAAGCAACTGGTGAACCAGCAAATATTCTTGTGACTCAAAACCCTGATGGCACAACTTCTATAGAAACAAGTGCAGTAGATCCCCTTCTGGTGAAAGATGAGAAGAATGTTGCCAAGATTGAAGCGGCACAATTTGCTGCACCGGAGGACATAAAAGATATTAAGGGTATTGATTTAAAGAGTGTAAGCAGTATGGGAGTGGAAGGTGCAGTAGTAAAGATCTCGGCTGGTGCTGCTGACCATGACCTGCATGCCATGTACAAAGTGAATGTAGAGGACCTTTCTCAACTACTCGCCTATCATGAGGTCTTTGGGAAACTTAGCAATGAACAGCAAACACCTCAACAGCAGCAACAACAACAACAGACACAACCAAATAAGCAGCCAGTTCTGTATGAAGTCGAACTAGAGGCGAGTACAAGTGCATCCATGTCTGAAGCCGAGGCGTCTCCTGGTCACCATGCATGTGATATCTGTGGAAAAATATTTCAATTTCGATATCAACTTATTGTTCACAGACGGTACCATGGTGAAGGCAAACAATATCCATGTCAAGTGTGTGGGAACGCATTTTCAAATCCAACGGAATTGTCTAAACATGGGAAATGTCATCTCGCCGGTGACCCAGCAGACAAACTGAAGCGTCTATCACAAGACAAACCCTACGCCTGCACAACTTGCCAAAAGACCTTCTGGCGGAAGGAACATCTTGACAACCATGTCAGAACACACACAGGGGAAACTCCATACAGATGCCAATACTGCGCAAAGACATTCACCCGTAAGGAGCACATGGTGAACCACGTTCGTAAACACACGGGCGAGACGCCGCACCGCTGCGAGATCTGCAAGAAGAGCTTCACGCGCAAAGAACATTTTATGAACCACGTCATGTGGCATACGGGTGAAACGCCGCACCATTGCCAAATTTGCGGCAAGAAGTATACTAGGAAGGAGCATTTAATGAACCATATGCGATCGCATGCGAACGACACGCCGTTCCGATGCGAACAGTGCGGAAAGTCCTTCACCAGAAAGGAACACTTCACCAATCACATTCTGTGGCACTCTGGTGAAACACCGCATCGATGCGACTTCTGTTCTAAGACTTTCACTCGCAAAGAACATTTGCTTAACCATGTTCGACAACATACGGGAGAATCCCCGCATCGGTGCAGTTTCTGTTCCAAATCATTTACGAGACGTGAACATCTCGTGAATCATGTGCGGCAACACACCGGCGAAACACCTTTCCAATGCGGCTACTGTCCCAAGGCGTTTACAAGGAAAGATCATTTAGTAAATCATGTCCGCCAACATACCGGGGAATCGCCACACAAGTGCTCATACTGCACCAAATCCTTTACGCGCAAAGAGCACTTGACAAATCATGTTCGGCAACATACCGGCGAATCTCCACATCGCTGTACGTTTTGCTCCAAGTCATTCACCCGGAAGGAACATCTCACCAACCATATAAGACAACACACAGGGGAGACTCCATTCAAATGTACATACTGCAATAAAGCGTTCTCTCGAAAGGAACACCTCACGAATCACATGCACATACACACTGGGGAGACGCCGCACAAATGTCCTTTTTGCACCAAGACATTTTCGAGGAAAGAACACCTAACTAATCATGTGCGGATACACACGGGCGAGTCGCCGCACCGTTGTGAATGTTGCGGCAAAACGTTCACCCGAAAGGAACATCTCAACAACCACATGCGACAACACACTGGAGATAGCCCTTTAACGTGTAAAGCGTGCTCTAAGACATTCACCCAAAAGGAGCACCTAGTCTCACATATGAAGTCACACGCCTGTAGCGACAAGCCGTTCGTTTGCGGCGAATGTGGAAAAGCATTCCCGCTCAAAGGCAATCTCCTTTTCCACGAGAGATCCCACTCAAAATCCGCCACGTCAAAAGTATTCAAATGTACCATATGTTCTAAAGAATTTATGTGCAAAGGTCATTTAACAACGCATCGTCGCACGCATACTGAGAACACGAATCAGGAAAATGCTGAAGACAACGATGTATGTATGGAGGAATGTGGCAAACCGTTTGAGGCAGAGCCCCTGGATGTTGATAGAAAACCAGATATTAGGCCTCCATCAGAAATGCAAGTGACCGAAAATTCAGTTCCTCAACCGCAGGCTAACACTGTGATGCAAGTGACTACTCAGCAAGTGCGTGCAACAGTCCCATCCAGCTCCACCAACGTCCCTACTGGCGCGTTTGCTCAGACGCAGCATCACACCGCCGTAGCGCATCATACCGTCACCGTTAACTACTAG
Protein Sequence: MNPDHHSINNGGGQPPGNSESQNQRVQSAQQQSIAPTTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTSTRIENGKPVQDLGQTHTSILNGDPNIILGHHSGQPQVTVSAGGQQIPISQIITTQSGQGHETLVAHTQQQEMSSQQSSSGTSQVPNNRVEFVQHHNIDMGHHSQHILQQQLMAARPDHSNQQIQLTVSEDGIVTVVEPGGGKMVDKDDLHETIKMPTDHTHLTVHQLQQIVGHHQVIDSVVRIEQATGEPANILVTQNPDGTTSIETSAVDPLLVKDEKNVAKIEAAQFAAPEDIKDIKGIDLKSVSSMGVEGAVVKISAGAADHDLHAMYKVNVEDLSQLLAYHEVFGKLSNEQQTPQQQQQQQQTQPNKQPVLYEVELEASTSASMSEAEASPGHHACDICGKIFQFRYQLIVHRRYHGEGKQYPCQVCGNAFSNPTELSKHGKCHLAGDPADKLKRLSQDKPYACTTCQKTFWRKEHLDNHVRTHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLMNHMRSHANDTPFRCEQCGKSFTRKEHFTNHILWHSGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTFCSKSFTRKEHLTNHIRQHTGETPFKCTYCNKAFSRKEHLTNHMHIHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCECCGKTFTRKEHLNNHMRQHTGDSPLTCKACSKTFTQKEHLVSHMKSHACSDKPFVCGECGKAFPLKGNLLFHERSHSKSATSKVFKCTICSKEFMCKGHLTTHRRTHTENTNQENAEDNDVCMEECGKPFEAEPLDVDRKPDIRPPSEMQVTENSVPQPQANTVMQVTTQQVRATVPSSSTNVPTGAFAQTQHHTAVAHHTVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00771241;
90% Identity: iTF_01203426;
80% Identity: -