Cqua009979.1
Basic Information
- Insect
- Conops quadrifasciatus
- Gene Symbol
- lrrfip2
- Assembly
- GCA_949752815.1
- Location
- OX457078.1:38806752-38807939[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-109 1.8e-105 353.1 28.6 1 300 30 320 30 320 0.96 2 2 0.077 1e+03 -0.7 3.6 218 245 346 373 323 394 0.51
Sequence Information
- Coding Sequence
- atgGATAGCAGTAGTGCTGTTGGAAGGCGGAGAATAAATTCCCGTGTTAATGCTGAGGACCAGGCCCTGGATCAAATCGCAAAGGAGGCTGAGGCTCGGTTAGCAGCACGCCGACAAGCTCGTGCTGAGGCACGGGAAGTTCGTATCCGTGATCTAGAACGCCAGCAGAAGCAACTGGAGCAGAATGCCGATCGTGTATTTGACATGCATACAGTTACTTGCCTAGATCCTTTATCCCGATCACGAATAAGTTCTGGAGTATGCGGATCTCCAATCACAAGAGCTAGTTCGATGTCGTCGCGCCGGAGCAGTGAGGATTCACTGGAGGAGGAGGGCCGGGGCTTACGTGAAATGAGACATGAGCTGAAGGAGATGGAGGAACGCTTCAGAAAAGTAATGATTGCTAATGCGCAATTGGATAATGAATGCTCGTCGCAAACTTATCAAATTCAGCTGCTGAAAGATAAACTGGATGAATTCGAAGAGTCATATGCGCAGCTTCAGAGAGAATTCAAGGAGAAAGTGCGCGACAGTAACGCTTTAAAAAGGAGCCTCGACAAGGTGAAAGACGAGCTGAGGATTGTTCAGAAGCAATTGGAAGAGCGTGACAAGTTGATCGAAGAGCAGGGCTTGGTAATTGTAACGGTCGAAAATGCAGATGGCACCGATGCAAAACGCGCTCTAGTCACTGTAGATAACGCGCAATTGCTAGGTTCCGTGCAGGGATCTCTGGATATACGACTGAAGAAGTTCAGTGAAGAAAAACAGCAGCTTTTGGCTGAGATAAAGCACTTGGAGCAACAATTAGAAGCCTGCAAGAGTCGAGGCGGAAAGGGGAATACCATGAACGGACCTGCAGTGGCAAATGAGGATGAGGAATACGAGGCTCAGCGAGaagcaaacaaaattatatcgGACTATAAGTATAAATTGCAGAAAGCCGAACAAGAAATAGCTACTCTTCAGGCGAGCTTAGCGCGATCAGAGACCCAAGTAATACGCTATAGAAGCACAGCCGAAGCTGCTGAGAAAGCTGAGTCTGAGCTGAAAATTGAGCGCAGAAAATTACAGCGGGAAAATCGCGAGGCCATGGAACGTTTGGAGGAGCTGGAAACATCAAATAATCATTTGCTGAAACGTTTGGACAagttgaaaaatgcaaaaagtgCACTGTTGAAAGAACTTTGA
- Protein Sequence
- MDSSSAVGRRRINSRVNAEDQALDQIAKEAEARLAARRQARAEAREVRIRDLERQQKQLEQNADRVFDMHTVTCLDPLSRSRISSGVCGSPITRASSMSSRRSSEDSLEEEGRGLREMRHELKEMEERFRKVMIANAQLDNECSSQTYQIQLLKDKLDEFEESYAQLQREFKEKVRDSNALKRSLDKVKDELRIVQKQLEERDKLIEEQGLVIVTVENADGTDAKRALVTVDNAQLLGSVQGSLDIRLKKFSEEKQQLLAEIKHLEQQLEACKSRGGKGNTMNGPAVANEDEEYEAQREANKIISDYKYKLQKAEQEIATLQASLARSETQVIRYRSTAEAAEKAESELKIERRKLQRENREAMERLEELETSNNHLLKRLDKLKNAKSALLKEL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00624743;
- 90% Identity
- iTF_01200899;
- 80% Identity
- -