Preg017101.1
Basic Information
- Insect
- Phormia regina
- Gene Symbol
- bab1
- Assembly
- GCA_001735585.1
- Location
- MINJ01007735.1:6589-8906[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5e-12 2.3e-08 34.6 0.0 4 45 418 459 415 459 0.91 2 2 2.2 1e+04 -2.7 0.9 4 20 556 571 556 571 0.86
Sequence Information
- Coding Sequence
- atGGGCGGTCCACCAGCGCCTAGTTCTTCAAATGGTCCCCCAGAGGGACAAACATACTGTTTACGGTGGAATAATCATAAATCAAATTTGGTTGAGATTTTAGATGCTCTCATCAAGGTCGAAAGTTATGTCGACTGTACCATAGTGGTAGATGATCAAGTGCAATTTAAAGCTCATCGTGTTGTCTTGGCTGCTAATTCACCCTATTTTCAATCTATTTTACAAGATTTACCCATGGATCATTGTAGTATTATATTTCCGGGTGTAAAGGCTTTTGAGATGCGTGCTTTATTGGAATATATGTATACGGGTGAGGTAAATGTTACCCAAAGTCAAATACCCAAAATTATGCGCATTGCCGAGGAATTGGAGGTAAAAGGTCTATTCGATATGGCTGACTTAAAGGAGAAGTTCAATAAATTAAGTGAAGAACATGCAGAAAGAGCGGCTAGTAATCCTTATGCCAGTACATCGGCTCCCTCAAATCCCTATTCCTCTGTTACTACCACCTCTTCGCCTTCAGCAAATACCGCACATCCGAAATCCAGCTCTAAGGATGCGGATAATTATCGTAATAATTCCTCCTCCGTGATCTCTACCTCCTCGAATATTTCACCTTCAGCTGCTCCCTCTAGTAGTTCATCGCCACCCTATAGCAATTACAAATCGCCCTATTCCAGTTTATATACCAAGTCTCCCGGGCCCAATGCAAATCAATCATCTTCAGCCCAACCTCAATCCAGCCAACAAACTCCCAGTAATCTTACACCCACCAGTGAACGTTCTGCTCAATGGCCGTTGTCACCTTCTGCTGCCGCTGCTGCTGCCATGTTAAGTTCTGTCTATGAATCTGCTCCCGATATGAATCCTTTGAAACGCAAGAAGCTCTCCTCCATGTCTAGTATGTTAATGAACCGTGACACACCAATTTTGCGAAATGTTTTGGCTCAAGCTAATCCCGCCGATTCGTCACAACAATTACCTCTAATGTTGCCCAATGTTGTTGGTAATAACAAAGCTGATAAGTCCTCTAGTTCGGAAAAGAATTTAAGTGGCCATAATAACAATCACAGCTTTAATGGTTCGGATTATAGCGATAagaAATACCACGATGAACCACATTCCCCATTCACCGATCGCTCATTTGAGGATGATGGCTTCGATCCCAAGGGCAGCAATTTTGGTGGTAATTTCGGCAACAATGCCAATCAAAAACCCGAATGGAAACGTTATAAACAGTATACCCGCAGTGATATCATGTCTGCCATTCAATGTGTACGCGAAGGCATGAGTGCTTTGCAAGCATCACGGAAATTTGGCGTACCCTCACGTACTCTGTATGACAAAGTGAAGAAATTGGGCATTACAACTGGCCGTCCTATGAATCGTACCATGAAACGTAGTCCCAGCAGTGTAGAATCATCGGCCGCCTTCCCTTATGCTCATGGTTATGGCCAAGCTTCGGCTGCTGCCGCTGCCATGCATGATGCTGCTGCTCGTGAAGAACGCGAAATGAAAGAACATCATCGCAGTAATGATCATCATCACCTACCACCCACCATTCCTCATCCAGCCGCTGCTCTATTAGATCACGCTTTCCTACAACAGGCATTGGAAAATCGTGGTGGTGGCGATATAGCAGGACGTGAGGCGCTTCATGCCATGGCTTTAGCTGCTGCTGCACATGCTGCCGCCAATCGTATGTCCACCAGTCCTGGACCCAATGGTAATGCAGTACGTTCCCCCAGTCCATCGAATTTCGCTTTGAAATATAACAACTTACGCAATGCCGAACAAGAACTAATGGAACGCCAGGAATTAGAACGGGAACGTGAGAGAGAACGTGAATTTATCGAACGGGAAAGAGAGCGTGAACGTGAACGTGACTTGGAACGTGAACGTGATGATGAAGAAGATGATCATGTTGAAGATTTATCAGTAGCCCGCAAAGACAATAACAATTCACCCTTAGAGGCCAGAGAAAGACCTGAATCTCCCTACTCACCGGCAGTAGCAGCCAATAGCGATAATGATAAATCCGTTATTATGACCACTAAATTACCCTCAAATCCCAATGATGATGCCTTCATCAATGAAACCAACCTCAAACGTGAGGTAGTAATAGATGATGTCAGAGCCGACTGA
- Protein Sequence
- MGGPPAPSSSNGPPEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDLPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFNKLSEEHAERAASNPYASTSAPSNPYSSVTTTSSPSANTAHPKSSSKDADNYRNNSSSVISTSSNISPSAAPSSSSSPPYSNYKSPYSSLYTKSPGPNANQSSSAQPQSSQQTPSNLTPTSERSAQWPLSPSAAAAAAMLSSVYESAPDMNPLKRKKLSSMSSMLMNRDTPILRNVLAQANPADSSQQLPLMLPNVVGNNKADKSSSSEKNLSGHNNNHSFNGSDYSDKKYHDEPHSPFTDRSFEDDGFDPKGSNFGGNFGNNANQKPEWKRYKQYTRSDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSVESSAAFPYAHGYGQASAAAAAMHDAAAREEREMKEHHRSNDHHHLPPTIPHPAAALLDHAFLQQALENRGGGDIAGREALHAMALAAAAHAAANRMSTSPGPNGNAVRSPSPSNFALKYNNLRNAEQELMERQELEREREREREFIERERERERERDLERERDDEEDDHVEDLSVARKDNNNSPLEARERPESPYSPAVAANSDNDKSVIMTTKLPSNPNDDAFINETNLKREVVIDDVRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258994;
- 90% Identity
- iTF_01194500; iTF_00258791; iTF_00258994; iTF_00259698; iTF_00259863; iTF_01259301; iTF_01259139; iTF_01260920; iTF_01261109; iTF_00331610; iTF_00331450; iTF_00350271; iTF_00350106;
- 80% Identity
- iTF_01194500;