Cruf009060.1
Basic Information
- Insect
- Chrysomya rufifacies
- Gene Symbol
- lola
- Assembly
- GCA_014858695.1
- Location
- JACGTJ010004304.1:1578-5149[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.8e-12 1.1e-08 34.6 0.0 4 45 419 460 416 460 0.91 2 2 2.6 5e+03 -2.7 0.9 4 20 556 571 556 571 0.86
Sequence Information
- Coding Sequence
- ATGGGCGGTCCACCAGCGCCTACTTCTTCAAATGGTCCACCAGAGGGTCAAACTTATTGTCTGCGTTGGAATAATCATAAATCGAATTTGGTAGAAATCCTAGATGCTCTCATTAAAGTCGAAAGTTATGTTGATTGCACCATAGTTGTCGATGATCAAGTACAATTTAAGGCACATCGTGTTGTTTTGGCCGCAAATTCTCCATATTTTCAGTCCATCTTACAAGATATGCCCATGGATCATTGTAGCATAATATTTCCAGGTGTTAAAGCTTTTGAAATGCGTGCTTTATTGGAATATATGTATACGGGTGAGGTGAATGTTACCCAAAGTCAAATACCTAAAATTATGCGCATTGCTGAGGAGTTGGAGGTTAAAGGTTTATTCGATATGGCCGATTTAAAGGAGAAATTCAATAAGTTAAGTGAAGAACATGCTGAAAGATCAGCTAGTAATCCATATGCTAGTACAACAGCTCCCTCAAATCCGTATTCCTCAGTAACCACCACATCATCGCCACCTTCAAATGTTACCCATGCAAAATCCAGTTCTAAAGATATGGATAATTATCGTAACAATTCCTCCTCCGTGATCTCTACCTCTTCAAATATTTCACCCTCAGCTGCTCCATCCAGTAGCTCATCACCTCCCTATAGCAATTATAAATCACCTTATTCCAATTTGTATACCAAATCCCCAGTACCCAATGCAAATCAATCCTCCTCGGCCCAAGCTCAGTCCAGTCAACAAACTCCCAGTAATCTAACACCCACCAGTGAACGTTCCGCTGCTCAATGGCCTTTATCACCTTCTGCTGCTGCCGCTGCTGCCATGTTAAGTTCGGTTTATGAATCTGCTCCCGATATGAATCCTTTGAAACGCAAAAAGCTCTCCTCCATGTCTAGCATGTTAATGAACCGTGACACTCCCATTTTGCGTAATGTCTTGGCTCAAGCTAATCCCGCCGATTCATCACAACAATTGCCTTTAATGTTGCCCAATGTTGTAAGCGGCAATAAGGGTGAGAAATCTTCTAGTGCCGAAAAGAATTTAAGTGGCCATAATAACAATCATAGCTTTAATGGTTCCGATTATAGTGATAAGAAATACCATGATGAGCCTCATTCCCCCTTTACCGATCGTTCCTTTGAAGATGATGGTTTCGATCCTAAGGGCAGCAATTTCGGTGGTAATTTCCCCAACAATGGTAATCAAAAACCCGAATGGAAACGTTATAAACAATATACCCGCAGTGATATTATGTCGGCCATACAATGTGTACGCGAAGGTATGAGCGCCCTACAAGCTTCACGTAAATTTGGTGTACCCTCACGTACTCTATACGACAAAGTCAAGAAATTAGGCATTACAACTGGCCGTCCTATGAATCGTACCATGAAACGTAGTCCCAGTAGTGTAGAATCCTCGGCTGCCTTCCCTTATGCACATGGTTATGGACAAGCTTCAGCCGCTGCTGCCATGCATGAGGCTGTTAGTCGTGAAGAACGTGAAATGAAAGAACATCATCGCAACAATGATCATCATCATCTGCCACCAACTATACCACATCCTGCTGCTGCTTTATTGGATCATGCTTTCCTCCAGCAGGCTTTGGAAAATCGTGGTGGTGGTGATATTGCTGGACGTGAAGCTTTACATGCTATGGCTTTAGCGGCAGCTGCTCATGCTGCTGCCAATCGTATGTCCACAAGTCCAGGACCTAATGGTAATGCTGTACGTTCACCTAGTCCCTCAAATTTTGCCTTGAAATATAATAATTTACGTAATGCCGAACAAGAGTTAATCGAACGTCATGAATTGGAACGTGAACGCGAAAGAGAACGTGAATTTATGGAACGTGAGCGTGAACGTGATACTGAACGTGAACATGATAGAGATTTAGAACGTGAACGTGATGAAGAAGATGATCATGTTGAAGATTTATCGGTGGCACGCAAAGACAATAACACATCACCCTTAGAGGCTAGAGAACGTCCCGATTCACCCTATTCACCCGGCATAACAGGTACTAATGAACAAGAAAAATCCGTTATAATGACCACTAAATTACCCACAACTACTAATAACGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCATTAATGAAACCAATCTCAAACGTGAGGTTATAATAGATGATGTTAGAGCCGACTGA
- Protein Sequence
- MGGPPAPTSSNGPPEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDMPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFNKLSEEHAERSASNPYASTTAPSNPYSSVTTTSSPPSNVTHAKSSSKDMDNYRNNSSSVISTSSNISPSAAPSSSSSPPYSNYKSPYSNLYTKSPVPNANQSSSAQAQSSQQTPSNLTPTSERSAAQWPLSPSAAAAAAMLSSVYESAPDMNPLKRKKLSSMSSMLMNRDTPILRNVLAQANPADSSQQLPLMLPNVVSGNKGEKSSSAEKNLSGHNNNHSFNGSDYSDKKYHDEPHSPFTDRSFEDDGFDPKGSNFGGNFPNNGNQKPEWKRYKQYTRSDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSVESSAAFPYAHGYGQASAAAAMHEAVSREEREMKEHHRNNDHHHLPPTIPHPAAALLDHAFLQQALENRGGGDIAGREALHAMALAAAAHAAANRMSTSPGPNGNAVRSPSPSNFALKYNNLRNAEQELIERHELEREREREREFMERERERDTEREHDRDLERERDEEDDHVEDLSVARKDNNTSPLEARERPDSPYSPGITGTNEQEKSVIMTTKLPTTTNNDXXXXXXXXXXXXXXXFINETNLKREVIIDDVRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258994;
- 90% Identity
- iTF_01194320;
- 80% Identity
- iTF_00331610;