Cvic027992.1
Basic Information
- Insect
- Calliphora vicina
- Gene Symbol
- lola
- Assembly
- GCA_958450345.1
- Location
- OY288236.1:34459116-34461381[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.3e-12 2.3e-08 34.6 0.0 4 45 423 464 420 464 0.91 2 2 3.6 1e+04 -2.7 0.9 4 20 561 576 561 576 0.86
Sequence Information
- Coding Sequence
- ATGGGCGGTCCACCGGCCCCTACCTCCTCAAATGGTCCACCAGAGGGCCAAACCTATTGCTTGCGCTGGAACAATCACAAATCGAATTTGGTCGAAATCTTAGATGCTCTCATCAAAGTCGAAAGTTATGTTGACTGCACCATAGTTGTAGATGATCAAGTGCAATTTAAGGCTCATCGTGTTGTTTTGGCCGCCAATTCACCCTATTTCCAGTCCATTTTACAGGATTTACCCATGGATCATTGTAGTATTATATTTCCGGGTGTGAAAGCTTTTGAAATGCGTGCTTTATTGGAGTATATGTATACGGGAGAAGTGAATGTTACCCAAAGTCAAATACCCAAAATTATGCGCATAGCTGAGGAATTGGAGGTTAAGGGTCTATTCGATATGGCCGACTTAAAGGAAAAGTTCCATAAACTAAGTGAAGAGCATGCTGAAAGATCGGCTAGTAATCCCTATGCCAGCACTTCGGCTCCTGCAAATCCCTATTCCTCGGTCACCACCACCACCTCCTCTCCTTCAAGCGCCATTACAAATCACAAACCCAGCCCCAAGGATGCTGAAAACTATCGTAACAATTCCTCCTCCGTGATCTCCACCTCCTCGAATATTTCACCTTCAGCAGCTCCCTCCAGCAGTTCATCGCCTCCCTACAGCAATTACAAATCACCCTATTCCAGTTTATATACCAAATCGCCGGGGCCCAATGCAAATCAATCTTCAGCTGCTCAAGCTCAATCCAGTCAACAAACTCCCAGCAATCTTACACCCACCAGTGAACGTTCCGCTCAATGGCCTTTGTCACCCTCCTCGGCTGCTGCCGCTGCTGCCATGTTAAGTTCTGTATATGAATCTGCTCCCGATATGAATCCCCTGAAACGTAAGAAGCTCTCCTCTATGTCCAGCATGTTAATGAATCGTGATACTCCCATACTGCGTAACGTTTTGGCCCAAGCTAATCCTGCTGATTCCTCACAACAATTGCCTCTACTCTTACCCAATGCAGCTGGCACTAAAGTTGACAAATCCTCCAGTTCAGCCGGTAACATGGAAAAGAATCCAAGTGGCCATAATAACAATCACAGTTTTAATGGTTCCGATTATAGTGATAAGAAATACCATGATGAGCCTCATTCCCCCTTTACCGATCGTTCATTTGAAGATGATGGCTTTGATCCCAAGGGCAGCAATTTTGGTGGCAATTTTGCCAACAATGCCAACCAAAAACCCGAATGGAAACGTTACAAACAATATACCCGCAGTGATATCATGTCTGCCATACAGTGTGTACGTGAAGGCATGAGTGCTTTGCAGGCTTCACGCAAATTCGGTGTGCCATCACGTACCTTGTACGACAAGGTCAAGAAATTGGGCATCACCACTGGCCGGCCTATGAATCGTACCATGAAACGCAGTCCCAGCAGTGTTGAATCATCGGCTGCCTTCCCCTATTCACATGGCTATGGACAAGCTTCGGCTGCTGCCGCCGCCATGCATGATGCCGCTGTACGTGAGGAACGTGAATTGAAGGAACATCATCGCAATAGCGAACATCATCATTTACCACCCACCATTCCACATCCCGCAGCTGCCCTATTAGATCATGCTTTCTTGCAACAGGCTTTGGAAAATCGTGGAGGTGGCGATATTGCGGGTCGTGAAGCATTGCATGCCATGGCTTTGGCAGCTGCAGCTCATGCCGCCGCCAATCGTATGTCCACCAGTCCCGGTCCCAATGGCAATGCTGTGCGTTCACCCAGTCCCACAAATTTCGCCTTGAAATACAACAATATGCGCAATGCCGAACAAGAGCTAATGGAACGCCACGAATTGGAACGTGAACGAGAGAGAGAACGTGAATTTGTGGAACGCGAAAGAGAGCGTGAACGCGAACGTGATATGGAACGCGAACGTGATGAGGAAGAGGATGATCATGTTGAGGATTTATCAGTGGCCCGCAAAGACAATAACAGTTCTCCTTTAGAGGCTAGGGAAAGACCCGAATCTCCCTACTCACCGGCTGTAACAGCCACTAGCGATAATGAGAAATCGGTTATAATGACCACTAAACTGCCCTCAAATCCCAGTAGTGATGATGCCTTTGTCAATGAAACCAACATGAACGTGAAACGGGAGGTGGTAATAGATGATGTCAGAGCCGACTGA
- Protein Sequence
- MGGPPAPTSSNGPPEGQTYCLRWNNHKSNLVEILDALIKVESYVDCTIVVDDQVQFKAHRVVLAANSPYFQSILQDLPMDHCSIIFPGVKAFEMRALLEYMYTGEVNVTQSQIPKIMRIAEELEVKGLFDMADLKEKFHKLSEEHAERSASNPYASTSAPANPYSSVTTTTSSPSSAITNHKPSPKDAENYRNNSSSVISTSSNISPSAAPSSSSSPPYSNYKSPYSSLYTKSPGPNANQSSAAQAQSSQQTPSNLTPTSERSAQWPLSPSSAAAAAAMLSSVYESAPDMNPLKRKKLSSMSSMLMNRDTPILRNVLAQANPADSSQQLPLLLPNAAGTKVDKSSSSAGNMEKNPSGHNNNHSFNGSDYSDKKYHDEPHSPFTDRSFEDDGFDPKGSNFGGNFANNANQKPEWKRYKQYTRSDIMSAIQCVREGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRTMKRSPSSVESSAAFPYSHGYGQASAAAAAMHDAAVREERELKEHHRNSEHHHLPPTIPHPAAALLDHAFLQQALENRGGGDIAGREALHAMALAAAAHAAANRMSTSPGPNGNAVRSPSPTNFALKYNNMRNAEQELMERHELEREREREREFVERERERERERDMERERDEEEDDHVEDLSVARKDNNSSPLEARERPESPYSPAVTATSDNEKSVIMTTKLPSNPSSDDAFVNETNMNVKREVVIDDVRAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00258994;
- 90% Identity
- iTF_01194320;
- 80% Identity
- iTF_00258994;