Pmet003014.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Phlogophora meticulosa
Gene Symbol
-
Assembly
GCA_905147745.1
Location
CAJHWW010000002.1:1800917-1804907[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.8e-08 4.4e-06 27.0 0.0 3 39 12 49 10 54 0.89

Sequence Information

Coding Sequence
ATGTCGCTTCTGCCGCGAAAGAAATGGGATTCTGATAAGATGCTGAAGGCGCACAATGCAGTAAAAAATAAAGAAATGGGCTACTTAAAGGCCTCTCAATTTTTTAACGTCCCAAAGTCAACTTTGGAGCGTTATTGTAAAAGTGTCAATCCTATAACAGAGCTAACCTCTATGAAAATGGGCCGAAAACCAACTTTTTCAGAGGAAATGGAACGTGAGCTTGCAGAGTACTGCATTACAATGGTGTCAAGGTTCTACGGACTGAGAGCCTCTGACATCCGCTCTTTGGCGTTCCAACTGGCTATAAAGAATGGACTGCCACACCAGTTTAATAGAAGCAAGAATACTGCAGGCCGAAAGTGGATGAGAAACTTTCTAAAAAGAAATCCTCGATTGTCTTTTAGGACACCTCAAGCTACATCTGCTAATAGAGCCAAGGGGTTTTCAAAAGGGAAGGTAGACGAATTTAATGATATTTTGGAGAAAGAGTTGGCAAAAATTAATTTTGATCCAACAAAAATCTACAACGTTGATGAGACTGGCGTGACTGTAGTTCAACATAAAATGGAAAAGGTCTTATGCCTGAAAGGACAAAAACAGGTTGGTGGAATTTCGTCGGCGGAGCGGGGAGCTCTTATAACTCTAGTCACGTGTATGAGCGCGTCGGGGGTCTTCGTTCCACCCTTATTCATTTTCCCCAGAGTTAACATGAAGGAAGAGTTAAAAAATGGTGCTCCACCTGGCTCTCAGTTTGCGTGTCACAAATCTGGCTGGATACAACTCCATATCTTTACACAATGGATTGTTCACTTCATCAACACTGTCCACCCATCTAAAGAGTGTCCAGTTATACTGATCCTAGATGGACACTACTCTCATACAAAAAATATTGATGTCATTGACAAATGTCGGGAAAATGGTGTCATTCTGATATGCCTCCCCCCACATTCGTCTCACCGAATGCAGCCCTTGGATGTATCATTTATGAACCCATTCAAGACGTACTATGCCAAAGAAATCGACTCATGGCTAAAAAATCACCCTGGCCGCGTCGTGACTGCATTCCAAGTTGCAGAATTAGTTGGAAAGGCATACATGAGGGCTGCTACACTGGAAGTCGCCGTCAATGGATTCCGTAAAAGCGGAATATTCCCATTCGACCGCAATAATTTCAGAGACCACGACTTCGCTGTACAGGACGGCAACGATGATGACACTAACATGGATGTGGAAACAGCTCCAGTCCTATCTCCAGTTGCATCGCATACGGGCTCACCGACAATCCTGGCAACTACTAGTGCCGTTTCAGTGCACTCACCATTACCATTTCATTTCGCTGTACAGGACGGCGACAATGATGACACGAATATGGATGTGGAATCAGCTCCAGTCCTATCTCCAATTGGATCGTATATGGCTGTACAGTACGATGACGCTGAAGACACTGGTATGAATTATGAATCATCTCTAGCTCCAGTTCCATCTCCAATCGCATCTTCTACTGAATCAGCAATGCCCCTAGCGACTACTAGTGCCGTACCTGCGCACTCGCCATTAGCATTTGCTTTAAACATGCGTTCGTCAAATTCCGGTGCTGATACGCCTTCGCTATCAGTTTCGACTCCTTCAGGTGTCTCGACTCTAGCATCGCTCGCCATGACTGCAGTCCAAAGTATAATCTCATCAGGTCCAGGTGCTGAAGCGGCTCCGCTTCCAGTCCTAACCCATAATGAATCAGCTACGGTGCCGTCGACATCAAATGACGAATTACCGGCTCCGCTTCCAGTCCTAGACCATAATGAATCAGCTACGGTGCCGTCGACATCAAATGACGAATTAGTTCATTCTCAAGTCTCGCGCAGTTCAAGGGCTCAAGCCCGACGAAAATTTTCCATAAAACCGGCTGAAATCAGTCCTTTTTCCACAATCCAGCGAAAAACCAAGAAACCTGATCAAGTATCACAGCTCCGAGGAGGAAAGCCTTTATTAGTCACCAGTTCACCATACAAAAATGAATTACAGGAACAACTGAATAAGAAGCAAGAAAAACCAGGAACATCTAAAAGTAAAACGAAAAAGGCGATGATTGCTAAAAAGAAATCTAAGACTGTTCAAAAAACCAAAACCATAAAGAAGAACAAGAAGATTACAAAAAAAAATGAAAAAAAGAAGATATCAGTAAAGAAGAAGATATTACAAAGTAGCTCATCTAGTGAGAGTGCCGATGAAGACCCATCACTGATGAGCTCAGATGAAAGCGAATGTAATGAAGACGTTGAATGCACATATTGCCTAACTGAATATTCAAATGACATTGCTGGAGAAAAGTGGATACATTGCACAAAATGTTTTCGGTGGTGTCACGAGTTGTGTGCTGGTGTAGAACCGCATGTCAATTTAGCGTGTGACCTTGGGTGTAGATTCAATGAAAGACTGGTAACGACTAACTCATGTATTGGCTCTTCACAGAATGACAAGTGCATAATCACTGCTAAGACATACTGA
Protein Sequence
MSLLPRKKWDSDKMLKAHNAVKNKEMGYLKASQFFNVPKSTLERYCKSVNPITELTSMKMGRKPTFSEEMERELAEYCITMVSRFYGLRASDIRSLAFQLAIKNGLPHQFNRSKNTAGRKWMRNFLKRNPRLSFRTPQATSANRAKGFSKGKVDEFNDILEKELAKINFDPTKIYNVDETGVTVVQHKMEKVLCLKGQKQVGGISSAERGALITLVTCMSASGVFVPPLFIFPRVNMKEELKNGAPPGSQFACHKSGWIQLHIFTQWIVHFINTVHPSKECPVILILDGHYSHTKNIDVIDKCRENGVILICLPPHSSHRMQPLDVSFMNPFKTYYAKEIDSWLKNHPGRVVTAFQVAELVGKAYMRAATLEVAVNGFRKSGIFPFDRNNFRDHDFAVQDGNDDDTNMDVETAPVLSPVASHTGSPTILATTSAVSVHSPLPFHFAVQDGDNDDTNMDVESAPVLSPIGSYMAVQYDDAEDTGMNYESSLAPVPSPIASSTESAMPLATTSAVPAHSPLAFALNMRSSNSGADTPSLSVSTPSGVSTLASLAMTAVQSIISSGPGAEAAPLPVLTHNESATVPSTSNDELPAPLPVLDHNESATVPSTSNDELVHSQVSRSSRAQARRKFSIKPAEISPFSTIQRKTKKPDQVSQLRGGKPLLVTSSPYKNELQEQLNKKQEKPGTSKSKTKKAMIAKKKSKTVQKTKTIKKNKKITKKNEKKKISVKKKILQSSSSSESADEDPSLMSSDESECNEDVECTYCLTEYSNDIAGEKWIHCTKCFRWCHELCAGVEPHVNLACDLGCRFNERLVTTNSCIGSSQNDKCIITAKTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01440963; iTF_01440964; iTF_01440965; iTF_01076424; iTF_01076394; iTF_01440972; iTF_01439856; iTF_01439857; iTF_00363961; iTF_00649954; iTF_00649955; iTF_00649956; iTF_00649957; iTF_00666462; iTF_00666463; iTF_01440967; iTF_00686285; iTF_00666461;
90% Identity
iTF_00666461;
80% Identity
-