Tcit038117.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992803.1:4267138-4269327[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6e-08 3.5e-05 24.9 0.0 3 39 15 52 13 57 0.89
Sequence Information
- Coding Sequence
- atgagtaccaatgagaaaaaaaagcgaAAGAAATGGGATTCTGATAAGATGCTGAAGGCGTACaatacagtaaaaaataaagaaatgggCTACTTAAAGGCCTCTCAATTTTTTAACGTCCCAAAGTCAACTTTGGAGCGTTATTGTAAAAGTGTCAATCCTATAACAGAGCTAACCTCTATGAAAATGGGCCGAAAACCAACTTTTTCAGAGGAAATGGAACGTGAGCTTGCAGAGTACTGCATTACAATGGTGTCAAGGTTCTACGGACTGAGAGCCTCTGACATCCGCTCTTTGGCGTTCCAACTGGCTATAAAGAATGGACTGCCACACCAGTTTAATAGAAGCAAGAATACTGCAGGCCGAAAGTGGATGAGAAACTTTCTAAAAAGAAATCCTCGATTGTCTTTTAGGACACCTCAAGCTACATCTGCTAATAGAGCCAAGGGGTTTTCAAAAGGGAAGGTAGAcgaatttaatgatattttggagAAAGAGTTGgcaaaaattaattttgatccAACAAAAATCTACAACGTTGATGAGACTGGCGTGACTGTAGTTCAACATAAAATGGAAAAGGTCTTATGCCTGAAAGAACAGAAACAGGTTGGTGGAATTTCGTCGGCGGAGCGGGGAGCTCTTATAACTCTAGTCACGTGTATGAGCGCGTCGGGGGTCTTCGTTCCACCCTTATTCATTTTCCCCAGAGTTAACATGAAGGAAGAGTTAAAAAATGGTGCTCCACCTGGCTCTCAGTTTGCGTGTCACAAATCTGGCTGGATACAACTCCATATCTTTACACAATGGATTGTTCACTTCATCAACACTGTCCACCCATCTAAAGAGTGTCCAGTTATACTGATCCTAGATGGACACTactctcatacaaaaaatattgatgtcaTTGACAAATGTCGGGAAAATGGTGTCCGTCTGATATGCCTCCCCCCACATTCGTCTCACCGAATGCAGCCCTTGGATGTATCATTTATGAACCCATTCAAGACGTACTATGCCAAAGAAATCGACTCATGGCTAAAAAATCACCCTGGCCGCGTCGTGACTGCATTCCAAGTTGCAGAATTAGTTGGAAAGGCATACATGAGGGCTGCTACACTGGAAGTCGCCGTCAATGGATTCCGTAAAAGCGGAATATTCCCATTCGACCGCAATCATTCCAGAGACCACGACTTCGCTGTACAGGACGGCAACGATGATGACACTTACATGGATGTGGAAACAGCTCCAGTCCTATCTCCAGTTGCATCGCATACGGGCTCACCGACAATCCTGGCAACTACTAGTGCCGTTTCAGTGCACTCACCATTACCATTTCATTTCGCTGTACAGGACGGCGACAATGATGACACGAATATGGATGTGGAATCAGCTCCAGTCCTATCTCCAATTGGATCGTATATGGCTGTACAGTACGATGACGCTGAAGACACTGGTATGAATTATGAATCATCTCTAGCTCCAGTCCCATCTCCAATCGCATCTTCTACTGAATCAGCAATGCCCCTAGCGACTACTAGTGCCGTACCTGCGCACTCGCCATTAGCATTTGCTTCAAACATGCGTTCGTCAAATTCCGGTGCTGATACGCCTTCGCTATCAGTTTCGACTCCTTCAGGTGTCTCGCCTCTAGCATCGCTCGCCATGACTGCAGTCCAAAGTATAATCTCATCAGGTCCAGGTGCTGAAGCGGCTCCGCTTCCAGTCCTAACCCATAATGAATCAGCTACGGTGCCGTCGACATCAAATGACGAATTACCGGCTCCGCTTCCAGTCCTAGACCATAATGAATCAGCTACGGTGCCGTCGACATCAAATGACGAATTAGTTCATTCTCAAGTCTCGCGCAGTTCAAGGGCTCAAGCCCGACGAAAATTTTCCATAAAACCGGCTGAAATCAGTCCTTTTTCCACAATCCAGCGAAAAACCAAGAAACCTGATCAAGTATCACAGCTCCGAGGAGGAAAGCCTTTATTAGTCACCAGTTCACCATACAAAAATGAATTACAGGAACAACTGAATAAGAAGCAAGAAAAACCAGGAACATCTAAAAGTAAAACGAAAAAAGCGATGATTGCTAAAAAGAAATCTAAGACTGTTCAAAAAACCAAAACCATAAAGAAGAACAagaagattacaaaaaaaaatgaaaaaagaagaTATCAGTAA
- Protein Sequence
- MSTNEKKKRKKWDSDKMLKAYNTVKNKEMGYLKASQFFNVPKSTLERYCKSVNPITELTSMKMGRKPTFSEEMERELAEYCITMVSRFYGLRASDIRSLAFQLAIKNGLPHQFNRSKNTAGRKWMRNFLKRNPRLSFRTPQATSANRAKGFSKGKVDEFNDILEKELAKINFDPTKIYNVDETGVTVVQHKMEKVLCLKEQKQVGGISSAERGALITLVTCMSASGVFVPPLFIFPRVNMKEELKNGAPPGSQFACHKSGWIQLHIFTQWIVHFINTVHPSKECPVILILDGHYSHTKNIDVIDKCRENGVRLICLPPHSSHRMQPLDVSFMNPFKTYYAKEIDSWLKNHPGRVVTAFQVAELVGKAYMRAATLEVAVNGFRKSGIFPFDRNHSRDHDFAVQDGNDDDTYMDVETAPVLSPVASHTGSPTILATTSAVSVHSPLPFHFAVQDGDNDDTNMDVESAPVLSPIGSYMAVQYDDAEDTGMNYESSLAPVPSPIASSTESAMPLATTSAVPAHSPLAFASNMRSSNSGADTPSLSVSTPSGVSPLASLAMTAVQSIISSGPGAEAAPLPVLTHNESATVPSTSNDELPAPLPVLDHNESATVPSTSNDELVHSQVSRSSRAQARRKFSIKPAEISPFSTIQRKTKKPDQVSQLRGGKPLLVTSSPYKNELQEQLNKKQEKPGTSKSKTKKAMIAKKKSKTVQKTKTIKKNKKITKKNEKRRYQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192618;
- 90% Identity
- iTF_00666461;
- 80% Identity
- -