Tcit042334.1
Basic Information
- Insect
- Tiliacea citrago
- Gene Symbol
- -
- Assembly
- GCA_963921375.1
- Location
- OY992808.1:2484256-2486649[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-08 1.3e-05 26.2 0.0 5 39 1 36 1 41 0.88 2 2 8.6 5e+03 -1.2 0.0 20 35 613 635 611 638 0.65
Sequence Information
- Coding Sequence
- ATGCTGAAGGCGTACAATgcagtaaaaaataaagaaatgggCTACTTAAAGGCCTCTCAAGTTTTTAACGTCCCAAAGTCAACTTTGGAGCGTTATTGTAAAAGTGTCAATCCTATAACAGAGCTAACCTCTATGAAAATGGGCCGAAAACCAACGTTTTCAGAGGAAATGGAACGTGAGCTTGCAGAGTACTGCATTACAATGGTGTCAAGGTTCTACGGACTGAGAGCCTCTGACATCCGCTCTTTGGCGTTCCAACTGGCTATAAAGAATGGACTGCCACACCAGTTTAATAGAAGCAAGAATACTGCAGGCCGAAAGTGGATGAGAAACTTTCTAAAAAGAAATCCTCGATTGTCTTTTAGGACACCTCAAGCTACATCTGCTAATAGAGCCAAGGGGTTTTCAAAAGGGAAGGTAGAcgaatttaatgatattttggagAAAGAGTTGgcaaaaattaattttgatccAACAAAAATCTACAACGTTGATGAGACTGGCGTGACTGTAGTTCAACATAAAATGGAAAAGGTCTTATGCCTGAAAGGACAGAAACAGGTTGGTGGAATTTCGTCGGCGGAGCGGGGAGCTCTTATAACTCTAGTCACGTGTATGAGCGCGTCGGGGGTCTTCGTTCCACCCTTATTCATTTTCCCCAGAGTTAACATGAAGGAAGAGTTAAAAAATGGTGCTCCACCTGGCTCTCAGTTTGCGTGTCACAAATCTGGCTGGATACAACTCCATATCTTTACACAATGGGTTGTTCACTTCATCAACACTGTCCACCCATCTAAAGAGTGTCCAGTTATACTGATCCTAGATGGACACTactctcatacaaaaaatattgatgtcaTTGACAAATGTCGGGAAAATGGTGTCATTCTGATATGCCTCCCCCCACATTCGTCTCACCGAATGCAGCCCTTGGATGTATCATTTATGAACCCATTCAAGACGTACTATGCCAAAGAAATCGACTCATGGCTAAAAAATCACCCTGGCCGCGTCGTGACTGCATTCCAAGTTGCAGAATTAGTTGGAAAGGCATACATGAGGGCTGCTACACTGGAAGTCGCCGTCAATGGATTCCGTAAAAGCGGAATATTCTCATTCGACCGCAATCATTTCAGAGACCACGACTTCGCTGTACAGGACGGCAACGATGATGACACTAACATGGATGTGGAAACAGCTCCAGTCCTATCTCCAGTTGCATCGCATACGGGCTCACCGACAATCCTGGCAACTACTAGTGCCGTTTCAGTGCACTCACCATTACCATTTCATTTCGCTGTACAGGACGGCGACAATGATGACACGAATATGGATGTGGAATCAGCTCCAGTCCTATCTCCAATTGGATCGTATATGGCTGTACAGTACGATGACGCTGAAGACACTGGTATGAATTATGAATCATCTCTAGCTCCAGTCCCATCTCCAATCGCATCTTCTACTGAATCAGCACTGTCGCTGTCCCTAGCGACTACTAGTGCCGTACCTGCGCACTCGCCATTAGCATTTGCTTTAAACATGCGTTCGTCAAATTCCGGTGCTGATACGCCTTCGCTATCAGTTTCGACTCCTTCAGGTGTCTCGACTCTAGCATCGCTCGCCATGACTGCAGTCCAAAGTATAATCTCATCAGGTCCAGGTGCTGAAGCGGCTCCGCTTCCAGTCCTAACCCATAATGAATCAGCTACGGTGCCGTCGACATCAAATGACGAATTACCGGCTCCGCTTCCAGTCCTAGACCATAATGAATCAGCTACGGTGCCGTCGACATCAAATGACGAATTAGTTCATTCTCAAGTCTCGCGCAGTTCAAGGGCTCAAGCCGGACGAAAATTTTCCATAAAACCGGCTGAAATCAGTCCCTTTTCCACAATCCAGCGAAAAACCAAGAAACCTGATCAAGTATCACAGCTCCGAGGAGGAAAGCCTTTATTAGTCACCAGTTCACCATACAAAAATGAATTACAGGAACAACTGAATAAGAAGCAAGAAAAACCAGGAACATCTAAAAGTAAAACGAAAAAGGCGATGATTGCTAAAAAGAAATCTAAGACTGTTCAAAAAACCAAAACCATAAAGAAGAACAagaagattacaaaaaaaaatgaaaaaaagaagatatcaGTAAAGAAGAAGATATTACAAAGTAGCTCATCTAGTGAGAGTGCCGATGAAGACCCATCACTGATGAGCTCAGATGAAAGCGAATGTAATGAAGACGTTGAATGCATATATTGCCTAACTGAATATTCAAATGACATTGCTGGAGAAAAGTGGATACAGTGCACAAAATGTTTTCGGTGGTGTCACGAGTTGTGTGCTGGTGTAGAACCGCATGTCAATAACTTCAATTGtgatctttgccgagattag
- Protein Sequence
- MLKAYNAVKNKEMGYLKASQVFNVPKSTLERYCKSVNPITELTSMKMGRKPTFSEEMERELAEYCITMVSRFYGLRASDIRSLAFQLAIKNGLPHQFNRSKNTAGRKWMRNFLKRNPRLSFRTPQATSANRAKGFSKGKVDEFNDILEKELAKINFDPTKIYNVDETGVTVVQHKMEKVLCLKGQKQVGGISSAERGALITLVTCMSASGVFVPPLFIFPRVNMKEELKNGAPPGSQFACHKSGWIQLHIFTQWVVHFINTVHPSKECPVILILDGHYSHTKNIDVIDKCRENGVILICLPPHSSHRMQPLDVSFMNPFKTYYAKEIDSWLKNHPGRVVTAFQVAELVGKAYMRAATLEVAVNGFRKSGIFSFDRNHFRDHDFAVQDGNDDDTNMDVETAPVLSPVASHTGSPTILATTSAVSVHSPLPFHFAVQDGDNDDTNMDVESAPVLSPIGSYMAVQYDDAEDTGMNYESSLAPVPSPIASSTESALSLSLATTSAVPAHSPLAFALNMRSSNSGADTPSLSVSTPSGVSTLASLAMTAVQSIISSGPGAEAAPLPVLTHNESATVPSTSNDELPAPLPVLDHNESATVPSTSNDELVHSQVSRSSRAQAGRKFSIKPAEISPFSTIQRKTKKPDQVSQLRGGKPLLVTSSPYKNELQEQLNKKQEKPGTSKSKTKKAMIAKKKSKTVQKTKTIKKNKKITKKNEKKKISVKKKILQSSSSSESADEDPSLMSSDESECNEDVECIYCLTEYSNDIAGEKWIQCTKCFRWCHELCAGVEPHVNNFNCDLCRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01192618;
- 90% Identity
- iTF_00666461;
- 80% Identity
- -