Paff003258.1
Basic Information
- Insect
- Perizoma affinitatum
- Gene Symbol
- -
- Assembly
- GCA_961405105.1
- Location
- OY560186.1:17087209-17094424[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0058 48 4.6 0.1 21 52 297 329 293 331 0.87 2 13 0.34 2.8e+03 -1.0 0.0 23 45 328 350 322 353 0.80 3 13 0.016 1.3e+02 3.3 0.2 21 49 406 434 402 439 0.89 4 13 0.0063 53 4.5 0.0 21 48 462 490 453 495 0.85 5 13 0.028 2.3e+02 2.4 0.1 21 48 539 566 536 567 0.89 6 13 7.2e-06 0.06 13.9 0.2 19 48 565 595 562 598 0.91 7 13 0.09 7.5e+02 0.8 0.1 21 46 647 672 643 676 0.87 8 13 0.11 9.6e+02 0.5 0.1 21 44 703 726 698 731 0.81 9 13 0.037 3.1e+02 2.1 0.2 21 46 731 756 728 762 0.78 10 13 0.26 2.2e+03 -0.7 0.0 26 51 820 845 815 846 0.76 11 13 2.6e-05 0.21 12.2 0.0 21 47 843 869 840 876 0.91 12 13 0.017 1.4e+02 3.1 0.1 21 50 899 928 891 930 0.88 13 13 0.0088 74 4.1 0.2 21 44 928 951 926 959 0.88
Sequence Information
- Coding Sequence
- ATGTCTATAACTTTGTGCCGACTGTGTTTAGCGGGTAATATCCGCATGCACTCTATAAGCAGCACCCGATATTTCGAGTTGTACGAGAAATTCACAGCACTAACTCTTTCTAACTTTAAGATGCCGGCCTTCCTTGAGCCGAACAAGGCCTCTTTCCCTCTAGAGGGAACGCCTCTTACATCATCTTGTGCCAGTATTGCATGTGATGAGCTGATCATGGAGGCCAGCCGCCCTGACTCCGTATGTTACCTCTGTAAGTCGCAGCTTCGGAGATTCTGTGCATTTTTTGAGATGGCGCATAACTCTGAGAAAAACCTCACAAAACTATTAGAAAACGGAGCCGAGTTGTCTGTAGTGGAGCGAGCAAGTGTACACAATCTGTCAGTGTCCGCTGTCAAACACACGTCGACCCTGGACGTGAAGGAGGAAACGGAAGTATCCGTTAAAGTGGAGAGCTTCGAGGAAAGGGCTGATGCTGGAGAAGATGTACAAGCAGATGTAGAGGTGACATTCGACGAAGACTCAGAATCTGATCCATTAGAAGCGGTGACCGTGAAAGCGGAGTTAAACGATTCTCAGAGTACCACAGTGTATCCGTGCCAAGACTGCCCGCGCCGATTCAACTCGACCAAAGATCTGAACCGCCACAATACCACCGTTCACAAACACCACGGCTGCAGCAAATGCGGCGAGACATTCCTGAAACCAGGCCATTTAAAAATGCATATGAGATTTCACCGCGACGAAATCTCATTTGCCTGTGACAGCAAGAACGAAAAAATGAGCAATCTCATAGTTGCCACGGGAGGTAAATTCGTTTGCGTTCTATGCAGTAAAACGTTCAGTCAGAAAGGGCATTTGAAAACGCATATAATGGCGATACATACAGGTGAAAGGCCGTTTTCGTGTACAGTTTGCGATAAAAGGTTCGTGCAACGAAGCAATTTGTCGGCGCATATGAAAACGATGCACACCAAAGCGAAACCGCTTACATGTGATGCTTGCAATATGGTATTCGATAACGAAAGCGAATGGAAAACTCATATGATGATTCTACATGGAGAAGTTGCAGAATATTCATTTGAAAAGGAAGCCCTCGATGATGATACCGACCAGACAACTGTAACGGATGTCAAACCGTTCGCTTGCATAATGTGCAGTAAGACGTTCGCCATGAAATCATACTTGAAATCTCATATGATGGCGATACACACGGGAGAGCGGCCGTTCCCTTGTAGTATGTGCGACAGGAAATACACACAGAAAAGCCATTTACGAGCGCACATGAGAATAGCGCACGCCGTCGAAAAACCGTTTGCGTGCGACGAATGCGAACTGAGATTCGATGACAATGACGAACTGAAGAAGCACGCGAAAGTCCACGCTGAACAGAAGCCATTGGCATGCGCTGCTTGCAATAAAGTGTACCAAGCTGAGGGAGATTTGAAAAAACATATGATCCTACACCACGGAGAAGCATCGTTTGCGAGCGATAGTAACGTAAAATTTTACGTGAAACGTAACACGGAAAATAAACGGTTCCCCTGTGGAATGTGCAGCAAAAGTTTTGGCTATAAATCTCATTTGAAAACACATATAATGGCGATACATACCGGAGAAAGGCCGTTTTCTTGCACTGTATGCGATAAGAAATTCGTCCAAAGAAGCTCTTTAAGAGTACACATGAGAACATCCCACTCGGAACAGAAGCCTTTAGCCTGTGACACCTGCAATAAAGTGTTCCAAGCGGAGAGCAATCTGAGAAAACACATGATTATACGTCACGGTGAAACCGGAGACAACTCATTTACGAACGAGCACGATGAAAAAGCCGAACGGAAAGTTGACCGCGCCAGAAAACCATTCGCATGCGCCCTGTGCAGCAAGTCATTCGGATGGAAGTCGCATTTAAAAACACATATAATGGCAATACACACTGGAGAGAGGCCGTTCTCGTGCACTATGTGTGATAAACGGTTCGTACAAAGGAGTTATTTAAGAGCACACATGTTGACCAGTCACTCCGGGCTCACGTACTCTTGTGAGAGGTGCAATAAACGCTGCACTTCAGCTAGCAATCTGCGAATACATATGAGATATCACACCGGAGAAAAGCCATTCGCCTGCCCGAAATGCGAGAGAGCGTACAAACGCAACGACAGCTTGAAGATCCACATGATGTGCCACCGCGGAGACCAGCCGTTCACTTGTAAAGTGTGCTCGCACAAGTTGAATTCGAAAACTGCCTTTCAGAATCATATGAGACTTCACACAACTCATTTACCGCCGTTCTTGTGCATTAAATGCAATAAGAAGTTCGATACTAAATGCGAATTAGATTCACATATTATGGAAACGCATGCCGCTGAACTGCCGTTCGCTTGCAAGAGTTGCGATCTCAGGTTCGacgataaaaatgtattgaagAAACACGCTCTGGTACACGAAGAGAAGCTTTCTTGCGACACTTGCAAAAAATCGTTCCACGCTAAAAGCGCTTTACGAAGGCACATGATCATCCACAGCACGGAGAAACCGTTCGCATGCGCCGTATGCAATAAGTTTTACAAACAGGCAAGGATCCTGAAGAAGCACATGGAAATTCACACGGACGAGAAGCAGTTCGCTTGCGACAGGTGCGATAAGAAATTCTTCCAGAAATGCAATCTAACGAGCCATATGAGAATTCACTCGGGTGAAAAGCCATTTGTGTGCGACCGCTGCGGGAACAGTTTCAACCAGAAAAGCCATTTGCGAACCCATATTTTATTCATGCACACCGCGGAGAGACCTTTCACGTGTGATGTCTGCAATAAGAAGTTCAGATTGAAGAGTTGTTTGAGGAACCATAAAATGGTACACACGGGCATAAGGCCGTTCCCGTGCGATCGATGCGAAAGGAAATACTATAAAAGGAGTGAATTGAGATCGCATATCGTGAAAATGCACACTTGA
- Protein Sequence
- MSITLCRLCLAGNIRMHSISSTRYFELYEKFTALTLSNFKMPAFLEPNKASFPLEGTPLTSSCASIACDELIMEASRPDSVCYLCKSQLRRFCAFFEMAHNSEKNLTKLLENGAELSVVERASVHNLSVSAVKHTSTLDVKEETEVSVKVESFEERADAGEDVQADVEVTFDEDSESDPLEAVTVKAELNDSQSTTVYPCQDCPRRFNSTKDLNRHNTTVHKHHGCSKCGETFLKPGHLKMHMRFHRDEISFACDSKNEKMSNLIVATGGKFVCVLCSKTFSQKGHLKTHIMAIHTGERPFSCTVCDKRFVQRSNLSAHMKTMHTKAKPLTCDACNMVFDNESEWKTHMMILHGEVAEYSFEKEALDDDTDQTTVTDVKPFACIMCSKTFAMKSYLKSHMMAIHTGERPFPCSMCDRKYTQKSHLRAHMRIAHAVEKPFACDECELRFDDNDELKKHAKVHAEQKPLACAACNKVYQAEGDLKKHMILHHGEASFASDSNVKFYVKRNTENKRFPCGMCSKSFGYKSHLKTHIMAIHTGERPFSCTVCDKKFVQRSSLRVHMRTSHSEQKPLACDTCNKVFQAESNLRKHMIIRHGETGDNSFTNEHDEKAERKVDRARKPFACALCSKSFGWKSHLKTHIMAIHTGERPFSCTMCDKRFVQRSYLRAHMLTSHSGLTYSCERCNKRCTSASNLRIHMRYHTGEKPFACPKCERAYKRNDSLKIHMMCHRGDQPFTCKVCSHKLNSKTAFQNHMRLHTTHLPPFLCIKCNKKFDTKCELDSHIMETHAAELPFACKSCDLRFDDKNVLKKHALVHEEKLSCDTCKKSFHAKSALRRHMIIHSTEKPFACAVCNKFYKQARILKKHMEIHTDEKQFACDRCDKKFFQKCNLTSHMRIHSGEKPFVCDRCGNSFNQKSHLRTHILFMHTAERPFTCDVCNKKFRLKSCLRNHKMVHTGIRPFPCDRCERKYYKRSELRSHIVKMHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01171642;
- 90% Identity
- iTF_01170771;
- 80% Identity
- iTF_01170771;