Basic Information

Insect: Perizoma flavofasciatum
Gene Symbol: -
Assembly: GCA_958496245.1
Location: OY292448.1:5318923-5323662[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 1.1e-05 0.00069 20.3 0.6 1 23 148 171 148 171 0.97

2 25 0.0015 0.091 13.6 1.7 3 23 176 196 175 196 0.98

3 25 7e-06 0.00043 20.9 1.1 1 23 222 245 222 245 0.95

4 25 6.8e-07 4.2e-05 24.1 1.0 1 23 251 274 251 274 0.97

5 25 0.0048 0.3 12.0 0.1 2 23 281 302 280 302 0.94

6 25 0.0025 0.16 12.9 0.3 2 23 331 353 330 353 0.89

7 25 2e-07 1.2e-05 25.8 1.8 1 23 359 382 359 382 0.97

8 25 7.5e-05 0.0046 17.7 0.2 1 23 388 410 388 410 0.97

9 25 0.0072 0.44 11.5 0.3 3 23 418 438 416 439 0.93

10 25 4.2e-06 0.00026 21.7 1.0 1 23 463 486 463 486 0.95

11 25 2.4e-07 1.5e-05 25.5 1.6 1 23 492 515 492 515 0.98

12 25 8.2e-05 0.005 17.6 0.3 3 23 523 544 521 544 0.95

13 25 0.00046 0.028 15.2 0.8 1 23 567 590 567 590 0.95

14 25 5.9e-06 0.00036 21.2 1.1 1 23 596 619 596 619 0.97

15 25 4.4e-06 0.00027 21.6 4.1 1 23 624 646 624 646 0.98

16 25 0.00042 0.026 15.4 2.5 1 21 652 672 652 674 0.94

17 25 0.00078 0.048 14.5 2.2 1 23 680 702 680 702 0.98

18 25 0.0026 0.16 12.9 0.4 3 23 711 732 709 732 0.88

19 25 0.024 1.4 9.9 0.5 3 23 740 760 738 760 0.96

20 25 0.00011 0.0068 17.2 1.5 2 23 765 786 764 786 0.96

21 25 0.00059 0.036 14.9 0.7 1 23 792 814 792 814 0.97

22 25 2.5e-05 0.0016 19.2 4.6 1 23 820 842 820 842 0.97

23 25 3.4e-05 0.0021 18.8 2.5 1 23 848 871 848 871 0.94

24 25 0.0002 0.012 16.3 4.9 1 23 877 899 877 899 0.98

25 25 0.00078 0.048 14.5 1.2 1 23 905 928 905 928 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	1.1e-05	0.00069	20.3	0.6	1	23	148	171	148	171	0.97
2	25	0.0015	0.091	13.6	1.7	3	23	176	196	175	196	0.98
3	25	7e-06	0.00043	20.9	1.1	1	23	222	245	222	245	0.95
4	25	6.8e-07	4.2e-05	24.1	1.0	1	23	251	274	251	274	0.97
5	25	0.0048	0.3	12.0	0.1	2	23	281	302	280	302	0.94
6	25	0.0025	0.16	12.9	0.3	2	23	331	353	330	353	0.89
7	25	2e-07	1.2e-05	25.8	1.8	1	23	359	382	359	382	0.97
8	25	7.5e-05	0.0046	17.7	0.2	1	23	388	410	388	410	0.97
9	25	0.0072	0.44	11.5	0.3	3	23	418	438	416	439	0.93
10	25	4.2e-06	0.00026	21.7	1.0	1	23	463	486	463	486	0.95
11	25	2.4e-07	1.5e-05	25.5	1.6	1	23	492	515	492	515	0.98
12	25	8.2e-05	0.005	17.6	0.3	3	23	523	544	521	544	0.95
13	25	0.00046	0.028	15.2	0.8	1	23	567	590	567	590	0.95
14	25	5.9e-06	0.00036	21.2	1.1	1	23	596	619	596	619	0.97
15	25	4.4e-06	0.00027	21.6	4.1	1	23	624	646	624	646	0.98
16	25	0.00042	0.026	15.4	2.5	1	21	652	672	652	674	0.94
17	25	0.00078	0.048	14.5	2.2	1	23	680	702	680	702	0.98
18	25	0.0026	0.16	12.9	0.4	3	23	711	732	709	732	0.88
19	25	0.024	1.4	9.9	0.5	3	23	740	760	738	760	0.96
20	25	0.00011	0.0068	17.2	1.5	2	23	765	786	764	786	0.96
21	25	0.00059	0.036	14.9	0.7	1	23	792	814	792	814	0.97
22	25	2.5e-05	0.0016	19.2	4.6	1	23	820	842	820	842	0.97
23	25	3.4e-05	0.0021	18.8	2.5	1	23	848	871	848	871	0.94
24	25	0.0002	0.012	16.3	4.9	1	23	877	899	877	899	0.98
25	25	0.00078	0.048	14.5	1.2	1	23	905	928	905	928	0.95

Sequence Information

Coding Sequence: ATGTACTCTATAAGCTGCACCCGATACCTCGAGTTGTACGAGAAATTCACAGGTGAAAAGcTGATCATGGAGGCCAGCCGCCCTGACTCCATATGTTACCTCTGTAACTCACAGCTGCGGAGATTCTGTGCATTCTTTGAGATGGCGTATAACTCTGAGAAAAACCTCACAAAACTATTGGAAAACGGAGCTGagTTGTCTGTAGTGGAGCGAGCGAGTATACACAACCTGTCAGTGTCAGCTGTGAAACACACGTCGACATTGGACGTGAAGGAAGAAATGGAAGTGTCCGTTAAAGTGGAGTGCTTCGAGGAAAGGGCTGATGCTGAagaagACCTACAAGCAGATGTAGAGGTGACATTCGACGAAGAATCAGTATCTGATCCATTAGAAGCTGTCACCGTAAAAGCTGAGTTGAACGATCCTCAGAACACCACAGTCTATCCATGCCAAGACTGTCCGCGCCGATTTAACTCGACGAAAGATCTAAACCGGCATTATATCACCGTTCATAAACACCACGGCTGCAGCAAATGCGGCGAAACATTCCTTAAACCAGGCCATTTAAAAATGCATATGAGATTTCACCGCGAAGAAATCTCATATGCCTGTGACAGTAAGAACGAAAGTATGAGCAATCTCATAGTTGCCACGGATGGTAAATTCGTTTGCGTCCTGTGCAGTAAAACTTTCAGTCAGAAAGGACATTTGAAAACACATATAATGGCGATACATACAGGGGAGAAACCGTTTGCGTGTACATTCTGCGACAAAAGGTTCGTGCAGAGAAGCAATTTGTCAGCGCACATTAAAACAATGCACACAAAAGCGAAACCGCTTACATGTGAACCATGCAATATGGTATTCGATAGCGAAAGCGATTGGAAAACTCATATGATGATTCACTATGGCGAAGATGGAGAATACTCATTTGAAAAGGTAGCTGTCGAAGTTGATATCGATCAGACAACTACGGATATTAAACCGTTCGCCTGTATTATGTGCAGTAAGACATTTGCTATGAAATCTTATTTGAAATCTCATATAATGGCGATACATACAGGAGAGCGACCGTTCCCATGCAGTATGTGTGACAGGAAATACACGCAGAAAAGCCATTTACGAGCGCATATGAGAATAGCGCACGCTGTGGAAAAGCCATTTGCGTGTGACGAATGCGAATTGAGATTTTATGACAATGATGAACTGAAGAAACACGCGAAAGTGCACGCTGAACAGAAACCCATAGCATGCGCGTCTTGCAATAAAGTGTTCGAAGCTGAAGGTGATTTCAAGAAACATATGATCCTACACCACGGTGAAGCTTCGCTTGTGAGTGATAATCGCGACAATTTTAACGTGAAACGTAAGACGGAAAATAAACGGTTCCCTTGTGAAATATGCACCAAGAGTTTCGGTTATAAATCTCATTTGAAAACACATATAATGGCGATACATACTGGTGAAAGGCCGTTTTCTTGCACTTTATGTGACAAGAAATTCGTCCAAAGAAGCTCTTTAAGAGTGCACATGAGGATGTCACACACGGAACAGAAGGCTTTAGCCTGTGACacgtgcaataaagtattccAAGCGGAGAGCAATTTGAGAAAACACATGATTATACGACACGGAGAATCTGGAGAAAACTCATTTACGAGTGACCACGATGAAAAAGCCGACCGCGGCAGAAAACCATTTACATGCGCTATTTGCAGCAAATCATTCGGTTGGAAGTCGCACTTAAAAACACATATAATGGCAATACACACTGGAGAAAGGCCATTCTCATGCACAAAGTGCGATAAACGATTCGTACAAGGGAGTTATTTAAGAGCGCACATGTTGTCGAATCACTCTGGGCTGACATATACGTGCGACAGGTGCAATAAACGATGCACTTCCGCTAGCAACTTGAGAATACATATGAGATatcacactggagaaaagccatttgCTTGTACGAAATGCGAGAGAGCTTACAAACGCAATGACAGTTTGAAAATTCACATGATGTGTCACCGCGGAGACCAACCGTTCACTTGTAAAGTGTGCTCGCAGAAATTGAATTCGAAAACTGCTTTTCAAAATCATATGAGACTTCACACAACCCATTTACCGCCGTTCCTGTGTATCAAATGCGATAAAAAGTTCGCTACGAAAAGCGAATTAGATTCGCATATAATAGAAACGCACGCCTCTGAAATGCCGTTCGGTTGCAAAAGCTGTGATTTGAGGTTCGACGATAAAAACGTATTGAAGAAACACGCGCTGATACACGAAGAGAAGCTTTCTTGCGATTCTTGCAACAAATCGTTCCACGCTAAAAGCGCTTTACGTAGGCACATGATCATCCACAGCACGGAGAAACCGTTCTCATGTGCCGTCTGCAAGAAGTCTTACAAACAGGCGCGGATCCTGAAGAAGCACATGGAAATTCACACGGATGAGAAACAGTTCGCTTGTGACCGGTGCGATAAGAAGTTCTTCCAGAAATGCAATCTGACGAGCCATATGAGAATTCACtctggagaaaagccatttgTTTGCGACCGCTGCGGGAACAGTTTCAATCAGAAAAGCCATTTGCGAACCcatatattatttatgcacACCGCGGAGAAACCTTTTACGTGTGATGTCTGTAATAAGAAGTTCAGATTGAAGAGTTGTTTAAGGAATCATAAAATGGTACATTCGGGCATAAGACCATATCCGTGTGATCGATGCGAAAGGAAATACTATAAGAAGAGTGAGTTGAGGTCGCATATTGTGAAAATGCACACTTGA
Protein Sequence: MYSISCTRYLELYEKFTGEKLIMEASRPDSICYLCNSQLRRFCAFFEMAYNSEKNLTKLLENGAELSVVERASIHNLSVSAVKHTSTLDVKEEMEVSVKVECFEERADAEEDLQADVEVTFDEESVSDPLEAVTVKAELNDPQNTTVYPCQDCPRRFNSTKDLNRHYITVHKHHGCSKCGETFLKPGHLKMHMRFHREEISYACDSKNESMSNLIVATDGKFVCVLCSKTFSQKGHLKTHIMAIHTGEKPFACTFCDKRFVQRSNLSAHIKTMHTKAKPLTCEPCNMVFDSESDWKTHMMIHYGEDGEYSFEKVAVEVDIDQTTTDIKPFACIMCSKTFAMKSYLKSHIMAIHTGERPFPCSMCDRKYTQKSHLRAHMRIAHAVEKPFACDECELRFYDNDELKKHAKVHAEQKPIACASCNKVFEAEGDFKKHMILHHGEASLVSDNRDNFNVKRKTENKRFPCEICTKSFGYKSHLKTHIMAIHTGERPFSCTLCDKKFVQRSSLRVHMRMSHTEQKALACDTCNKVFQAESNLRKHMIIRHGESGENSFTSDHDEKADRGRKPFTCAICSKSFGWKSHLKTHIMAIHTGERPFSCTKCDKRFVQGSYLRAHMLSNHSGLTYTCDRCNKRCTSASNLRIHMRYHTGEKPFACTKCERAYKRNDSLKIHMMCHRGDQPFTCKVCSQKLNSKTAFQNHMRLHTTHLPPFLCIKCDKKFATKSELDSHIIETHASEMPFGCKSCDLRFDDKNVLKKHALIHEEKLSCDSCNKSFHAKSALRRHMIIHSTEKPFSCAVCKKSYKQARILKKHMEIHTDEKQFACDRCDKKFFQKCNLTSHMRIHSGEKPFVCDRCGNSFNQKSHLRTHILFMHTAEKPFTCDVCNKKFRLKSCLRNHKMVHSGIRPYPCDRCERKYYKKSELRSHIVKMHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01171128; iTF_01170771;
90% Identity: -
80% Identity: -