Paff003258.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Perizoma affinitatum
Gene Symbol
-
Assembly
GCA_961405105.1
Location
OY560186.1:17087209-17094424[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 8.7e-05 0.0057 17.5 0.9 1 23 198 221 198 221 0.95
2 25 0.0016 0.1 13.5 1.7 3 23 226 246 225 246 0.98
3 25 7.6e-06 0.00049 20.9 1.1 1 23 272 295 272 295 0.95
4 25 8.7e-08 5.6e-06 27.0 1.1 1 23 301 324 301 324 0.98
5 25 0.0018 0.12 13.4 0.1 2 23 331 353 330 353 0.95
6 25 0.0012 0.079 13.9 0.4 2 23 382 404 381 404 0.89
7 25 2.2e-07 1.4e-05 25.7 1.8 1 23 410 433 410 433 0.97
8 25 8.4e-05 0.0055 17.6 0.1 1 23 439 461 439 461 0.97
9 25 0.052 3.4 8.8 0.2 3 23 469 489 467 490 0.91
10 25 1.8e-05 0.0012 19.6 1.0 1 23 514 537 514 537 0.95
11 25 8.4e-08 5.4e-06 27.0 1.6 1 23 543 566 543 566 0.98
12 25 8.8e-05 0.0057 17.5 0.3 3 23 574 595 572 595 0.95
13 25 0.0039 0.25 12.3 0.6 1 23 622 645 622 645 0.94
14 25 3.4e-07 2.2e-05 25.1 1.5 1 23 651 674 651 674 0.98
15 25 6.4e-06 0.00042 21.1 3.9 1 23 679 701 679 701 0.98
16 25 0.00013 0.0082 17.0 1.7 1 21 707 727 707 729 0.94
17 25 0.005 0.32 12.0 4.1 1 23 735 757 735 757 0.98
18 25 0.088 5.7 8.1 2.2 3 23 766 787 764 787 0.89
19 25 0.005 0.32 12.0 0.4 1 23 793 815 793 815 0.96
20 25 7.9e-05 0.0051 17.6 1.9 2 23 820 841 819 841 0.96
21 25 0.0024 0.15 13.0 0.4 1 23 847 869 847 869 0.97
22 25 2.7e-05 0.0018 19.1 4.6 1 23 875 897 875 897 0.97
23 25 3.6e-05 0.0024 18.7 2.5 1 23 903 926 903 926 0.94
24 25 0.00022 0.014 16.3 4.9 1 23 932 954 932 954 0.98
25 25 0.0018 0.12 13.4 1.1 1 23 960 983 960 983 0.95

Sequence Information

Coding Sequence
ATGTCTATAACTTTGTGCCGACTGTGTTTAGCGGGTAATATCCGCATGCACTCTATAAGCAGCACCCGATATTTCGAGTTGTACGAGAAATTCACAGCACTAACTCTTTCTAACTTTAAGATGCCGGCCTTCCTTGAGCCGAACAAGGCCTCTTTCCCTCTAGAGGGAACGCCTCTTACATCATCTTGTGCCAGTATTGCATGTGATGAGCTGATCATGGAGGCCAGCCGCCCTGACTCCGTATGTTACCTCTGTAAGTCGCAGCTTCGGAGATTCTGTGCATTTTTTGAGATGGCGCATAACTCTGAGAAAAACCTCACAAAACTATTAGAAAACGGAGCCGAGTTGTCTGTAGTGGAGCGAGCAAGTGTACACAATCTGTCAGTGTCCGCTGTCAAACACACGTCGACCCTGGACGTGAAGGAGGAAACGGAAGTATCCGTTAAAGTGGAGAGCTTCGAGGAAAGGGCTGATGCTGGAGAAGATGTACAAGCAGATGTAGAGGTGACATTCGACGAAGACTCAGAATCTGATCCATTAGAAGCGGTGACCGTGAAAGCGGAGTTAAACGATTCTCAGAGTACCACAGTGTATCCGTGCCAAGACTGCCCGCGCCGATTCAACTCGACCAAAGATCTGAACCGCCACAATACCACCGTTCACAAACACCACGGCTGCAGCAAATGCGGCGAGACATTCCTGAAACCAGGCCATTTAAAAATGCATATGAGATTTCACCGCGACGAAATCTCATTTGCCTGTGACAGCAAGAACGAAAAAATGAGCAATCTCATAGTTGCCACGGGAGGTAAATTCGTTTGCGTTCTATGCAGTAAAACGTTCAGTCAGAAAGGGCATTTGAAAACGCATATAATGGCGATACATACAGGTGAAAGGCCGTTTTCGTGTACAGTTTGCGATAAAAGGTTCGTGCAACGAAGCAATTTGTCGGCGCATATGAAAACGATGCACACCAAAGCGAAACCGCTTACATGTGATGCTTGCAATATGGTATTCGATAACGAAAGCGAATGGAAAACTCATATGATGATTCTACATGGAGAAGTTGCAGAATATTCATTTGAAAAGGAAGCCCTCGATGATGATACCGACCAGACAACTGTAACGGATGTCAAACCGTTCGCTTGCATAATGTGCAGTAAGACGTTCGCCATGAAATCATACTTGAAATCTCATATGATGGCGATACACACGGGAGAGCGGCCGTTCCCTTGTAGTATGTGCGACAGGAAATACACACAGAAAAGCCATTTACGAGCGCACATGAGAATAGCGCACGCCGTCGAAAAACCGTTTGCGTGCGACGAATGCGAACTGAGATTCGATGACAATGACGAACTGAAGAAGCACGCGAAAGTCCACGCTGAACAGAAGCCATTGGCATGCGCTGCTTGCAATAAAGTGTACCAAGCTGAGGGAGATTTGAAAAAACATATGATCCTACACCACGGAGAAGCATCGTTTGCGAGCGATAGTAACGTAAAATTTTACGTGAAACGTAACACGGAAAATAAACGGTTCCCCTGTGGAATGTGCAGCAAAAGTTTTGGCTATAAATCTCATTTGAAAACACATATAATGGCGATACATACCGGAGAAAGGCCGTTTTCTTGCACTGTATGCGATAAGAAATTCGTCCAAAGAAGCTCTTTAAGAGTACACATGAGAACATCCCACTCGGAACAGAAGCCTTTAGCCTGTGACACCTGCAATAAAGTGTTCCAAGCGGAGAGCAATCTGAGAAAACACATGATTATACGTCACGGTGAAACCGGAGACAACTCATTTACGAACGAGCACGATGAAAAAGCCGAACGGAAAGTTGACCGCGCCAGAAAACCATTCGCATGCGCCCTGTGCAGCAAGTCATTCGGATGGAAGTCGCATTTAAAAACACATATAATGGCAATACACACTGGAGAGAGGCCGTTCTCGTGCACTATGTGTGATAAACGGTTCGTACAAAGGAGTTATTTAAGAGCACACATGTTGACCAGTCACTCCGGGCTCACGTACTCTTGTGAGAGGTGCAATAAACGCTGCACTTCAGCTAGCAATCTGCGAATACATATGAGATATCACACCGGAGAAAAGCCATTCGCCTGCCCGAAATGCGAGAGAGCGTACAAACGCAACGACAGCTTGAAGATCCACATGATGTGCCACCGCGGAGACCAGCCGTTCACTTGTAAAGTGTGCTCGCACAAGTTGAATTCGAAAACTGCCTTTCAGAATCATATGAGACTTCACACAACTCATTTACCGCCGTTCTTGTGCATTAAATGCAATAAGAAGTTCGATACTAAATGCGAATTAGATTCACATATTATGGAAACGCATGCCGCTGAACTGCCGTTCGCTTGCAAGAGTTGCGATCTCAGGTTCGacgataaaaatgtattgaagAAACACGCTCTGGTACACGAAGAGAAGCTTTCTTGCGACACTTGCAAAAAATCGTTCCACGCTAAAAGCGCTTTACGAAGGCACATGATCATCCACAGCACGGAGAAACCGTTCGCATGCGCCGTATGCAATAAGTTTTACAAACAGGCAAGGATCCTGAAGAAGCACATGGAAATTCACACGGACGAGAAGCAGTTCGCTTGCGACAGGTGCGATAAGAAATTCTTCCAGAAATGCAATCTAACGAGCCATATGAGAATTCACTCGGGTGAAAAGCCATTTGTGTGCGACCGCTGCGGGAACAGTTTCAACCAGAAAAGCCATTTGCGAACCCATATTTTATTCATGCACACCGCGGAGAGACCTTTCACGTGTGATGTCTGCAATAAGAAGTTCAGATTGAAGAGTTGTTTGAGGAACCATAAAATGGTACACACGGGCATAAGGCCGTTCCCGTGCGATCGATGCGAAAGGAAATACTATAAAAGGAGTGAATTGAGATCGCATATCGTGAAAATGCACACTTGA
Protein Sequence
MSITLCRLCLAGNIRMHSISSTRYFELYEKFTALTLSNFKMPAFLEPNKASFPLEGTPLTSSCASIACDELIMEASRPDSVCYLCKSQLRRFCAFFEMAHNSEKNLTKLLENGAELSVVERASVHNLSVSAVKHTSTLDVKEETEVSVKVESFEERADAGEDVQADVEVTFDEDSESDPLEAVTVKAELNDSQSTTVYPCQDCPRRFNSTKDLNRHNTTVHKHHGCSKCGETFLKPGHLKMHMRFHRDEISFACDSKNEKMSNLIVATGGKFVCVLCSKTFSQKGHLKTHIMAIHTGERPFSCTVCDKRFVQRSNLSAHMKTMHTKAKPLTCDACNMVFDNESEWKTHMMILHGEVAEYSFEKEALDDDTDQTTVTDVKPFACIMCSKTFAMKSYLKSHMMAIHTGERPFPCSMCDRKYTQKSHLRAHMRIAHAVEKPFACDECELRFDDNDELKKHAKVHAEQKPLACAACNKVYQAEGDLKKHMILHHGEASFASDSNVKFYVKRNTENKRFPCGMCSKSFGYKSHLKTHIMAIHTGERPFSCTVCDKKFVQRSSLRVHMRTSHSEQKPLACDTCNKVFQAESNLRKHMIIRHGETGDNSFTNEHDEKAERKVDRARKPFACALCSKSFGWKSHLKTHIMAIHTGERPFSCTMCDKRFVQRSYLRAHMLTSHSGLTYSCERCNKRCTSASNLRIHMRYHTGEKPFACPKCERAYKRNDSLKIHMMCHRGDQPFTCKVCSHKLNSKTAFQNHMRLHTTHLPPFLCIKCNKKFDTKCELDSHIMETHAAELPFACKSCDLRFDDKNVLKKHALVHEEKLSCDTCKKSFHAKSALRRHMIIHSTEKPFACAVCNKFYKQARILKKHMEIHTDEKQFACDRCDKKFFQKCNLTSHMRIHSGEKPFVCDRCGNSFNQKSHLRTHILFMHTAERPFTCDVCNKKFRLKSCLRNHKMVHTGIRPFPCDRCERKYYKRSELRSHIVKMHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01171642;
90% Identity
iTF_01171128;
80% Identity
iTF_01171128;