Pace003546.1
Basic Information
- Insect
- Periphyllus acericola
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_949715065.1
- Location
- OX454264.1:56170200-56172453[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-32 1.2e-28 100.9 5.6 179 300 9 123 6 123 0.84 2 2 0.0095 64 3.3 5.1 121 173 122 174 121 180 0.88
Sequence Information
- Coding Sequence
- ATGGTTCTAGGATCCACTAGGGAAAAAGAACTTGTAATTATAAGCACAGAACAAGAAGAATGGAATGATAGTGACCaaagtaatagtaaaataaaacgtgCTTTAGTTTCTGTTGAAAATGCTCAATTGTTGCAATACGCTGGAGAGGGTTGTTTAGATGTACGACTCAAAAAGTTTACTGAAGAACGCAATAGCTATTTAGAAGAAATCAACCAACTCAAATTAGAGTTGCAAGAAGCCAAACGTCATAGTGATAGCCATTACAACGGTACAGACTCAGACGATTTGGAAGATGCCCAAAAAGAAACAAACAAAGTTCTTGGGGATTATAAATTCAAGTGGCAAAAGGCTGAACAAGACATTTCTACATTACAAGCAAATgtAGCAAGACTTGATAGTCAAGTTGTTAGATATAAAACGGCTTCTGAAGCAGCTGAAAAAGCTGAAGATGAACTTAAGttggaaaaaagaaaacttcAACGAGAGcTTCGGGAAGCTCAAGCAAAAATTGAAGAATCAAAATCTAGTTTATTGAAAGACCTGTAA
- Protein Sequence
- MVLGSTREKELVIISTEQEEWNDSDQSNSKIKRALVSVENAQLLQYAGEGCLDVRLKKFTEERNSYLEEINQLKLELQEAKRHSDSHYNGTDSDDLEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLDSQVVRYKTASEAAEKAEDELKLEKRKLQRELREAQAKIEESKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01169842; iTF_01167609;
- 90% Identity
- iTF_01169842;
- 80% Identity
- -