Pnig000542.1
Basic Information
- Insect
- Pentalonia nigronervosa
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_014851325.1
- Location
- scaffold:469-2319[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-34 3.4e-30 106.0 3.2 178 300 1 116 1 116 0.86 2 2 0.0088 2.4e+02 1.4 0.8 121 162 115 156 114 159 0.87
Sequence Information
- Coding Sequence
- GAAAAAGGATTAGTAATTATCAGCACTGAACAAGGAAATTGGAGTGAGAGTGACCAATGTAATAATAAAATAAAACGTACTTTAGTTTCTGTTGAAAATGCTCAATTGTTACAAGACGCAGGAGAAGGTTGTTTAGATGTACGACTCAAAAAGTTTACTGAAGAACGCAATAGCTATATAGACGAAATAAGCCAGCTCAAATTAGAGTTACAAGAAGCCAAACGTCATAGTGATAACCATTACAATGGTACAGATTCAGACGATTTGGAAGATACCCAAAAAGAAACTAATAAAGTTCTTGGCGATTACAAATTCAAGTGGCAAAAGGCTGAACAAGATATTTCTACATTGCAAGCTAATGTTGCTAGGCTTGAGAGTCAAGTTATTAGATATAAAACAGCTTCTGAAGCATCTGAAAAAGCTGAAGATGAACTGAAATTGGAAAAACGAAAATTACAGCGTGAAGTATTAATTACTTTTTATAAAATATTTTACTTTATAACTTTTAAATTAAACATGAATATACAGTGA
- Protein Sequence
- EKGLVIISTEQGNWSESDQCNNKIKRTLVSVENAQLLQDAGEGCLDVRLKKFTEERNSYIDEISQLKLELQEAKRHSDNHYNGTDSDDLEDTQKETNKVLGDYKFKWQKAEQDISTLQANVARLESQVIRYKTASEASEKAEDELKLEKRKLQREVLITFYKIFYFITFKLNMNIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01169841;
- 90% Identity
- -
- 80% Identity
- -