Pace003549.1
Basic Information
- Insect
- Periphyllus acericola
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_949715065.1
- Location
- OX454264.1:56200528-56203484[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3e-30 8.5e-27 94.8 5.6 179 300 50 164 25 164 0.79 2 2 0.013 90 2.8 5.1 121 173 163 215 162 221 0.88
Sequence Information
- Coding Sequence
- ATGGACGCAGTCTTGGCTGTTGATCGTGAGGTTGATAAAGTTTTGTCAAAATTTGGAGATATACGCCGAGGCTTTAGTGATGGAATACAGGATTTAATTGACAGTTTGGAGAGTATGAAAAATGATTTGGAGACAAATAATACCAATGGAGAACTTGTAATTATAAGCACAGAACAAGAAGAATGGAATGATAGTGACCaaagtaatagtaaaataaaaggtGCTTTAGTTTATGTTGAAAATGCTCAATTGTTGCAATACGCTGGAGAGGGTTGTTTAGATGTACGACTCAAAAAGTTTACTGAAGAACGCAATAGCTATTTAGAAGAAATCAACCAACTCAAATTAGAGTTGCAAGAAGCCAAACGTCATAGTGATAGCCATTACAACGGTACAGACTCAGACGATTTGGAAGATGCCCAAAaAGAAACAAACAAAGTTCTTGGGGATTATAAATTCAAGTGGCAAAAGGCTGAACAAGACATTTCTACATTACAAGCAAATgtAGCAAGACTTGATAGTCAAGTTGTTAGATATAAAACGGCTTCTGAAGCAGCTGAAAAAGCTGAAGATGAACTTAAGttggaaaaaagaaaacttcAACGAGAGcTTCGGGAAGCTCAAGCAAAAATTGAAGAATCAAAATCTAGTTTATTGAAAGACCTGTAA
- Protein Sequence
- MDAVLAVDREVDKVLSKFGDIRRGFSDGIQDLIDSLESMKNDLETNNTNGELVIISTEQEEWNDSDQSNSKIKGALVYVENAQLLQYAGEGCLDVRLKKFTEERNSYLEEINQLKLELQEAKRHSDSHYNGTDSDDLEDAQKETNKVLGDYKFKWQKAEQDISTLQANVARLDSQVVRYKTASEAAEKAEDELKLEKRKLQRELREAQAKIEESKSSLLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01169841;
- 90% Identity
- iTF_01169841;
- 80% Identity
- -