Phum002518.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- -
- Assembly
- GCA_000006295.1
- Location
- NW:416953-419852[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.6 3.9e+03 -3.1 0.0 29 36 20 28 18 29 0.74 2 3 6.3e-05 0.097 11.7 0.0 1 39 59 96 59 102 0.89 3 3 1.2e-10 1.8e-07 30.1 0.0 3 35 118 151 116 159 0.89
Sequence Information
- Coding Sequence
- ATGAACACATTCTCCAGTgcCAAACTATTAGAAAGCTCACACGGTTGGCTCGGTGCTTCCACATCAACATTAGCCGaAAGATGTTTAGGATACAATCCCGATATAGTTAATATCGTCGGAGAAAAAACGTGGATGAAAGCACTTCAGGAATCTAAAAGTCTGAATTCTAAATGGACGCAAGATGATTTAGTGACGGCCATCGAACTCGTCCGCGGCGGGACACCCATCAAACCCGCCGCCGAGCGGTGTGCCATACCCGTTATGACCCTTTGGAGAAGGACGAAAGCTTTGGGAATGGTCAGCAATGTGCCAGGGTGTTTTATGCGTCTTCGAACTCCTAATTGGACACAAGGTCAACTCAAAGAAGCGATTCAAGCTGTCGTGACGCAAAGAATGCGATTCACGCAAGCATCGTCTCGGTACGGGATACCCAAAGGAACTCTTTATGACAATATATTAgggaaaacgaaaagaatGCTTGTTTTGGATGCTGCGGGTCTCACGCCGACGGAAGAAAACGCGGTTTTGGATTTCTGTTGTCAGATATCCGTGTCTCCGTATAACAGGAGAACTCAGAAACCCCTTTCCTCCATATTGAATTTTGTTGAATGCATACGTCGTAAAAGGGATCCCAATTTTAAATTCACTCGGATATCCGGATTCAGGTGGTGGTGggctttttgtaaaaaacacAGCATCGTGTCGTTATATTTCGAAACGAGACCCGACGAATGA
- Protein Sequence
- MNTFSSAKLLESSHGWLGASTSTLAERCLGYNPDIVNIVGEKTWMKALQESKSLNSKWTQDDLVTAIELVRGGTPIKPAAERCAIPVMTLWRRTKALGMVSNVPGCFMRLRTPNWTQGQLKEAIQAVVTQRMRFTQASSRYGIPKGTLYDNILGKTKRMLVLDAAGLTPTEENAVLDFCCQISVSPYNRRTQKPLSSILNFVECIRRKRDPNFKFTRISGFRWWWAFCKKHSIVSLYFETRPDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01308615; iTF_00362464; iTF_01250999;
- 90% Identity
- -
- 80% Identity
- -