Rmar003587.1
Basic Information
- Insect
- Ricinus marginatus
- Gene Symbol
- -
- Assembly
- GCA_028565995.1
- Location
- JAOWBB010000006.1:90958-93300[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00019 0.75 10.5 0.0 1 38 85 121 85 126 0.92 2 2 2e-12 7.8e-09 36.1 0.1 1 43 145 187 145 189 0.92
Sequence Information
- Coding Sequence
- ATGCCTTTGTCCTCTCCTCCTGCCtcgcttcttttccttttgtacGGCGTCAGCGCTTCCAATCGTTGCACGCCCCTTCCCTTCCGGCCCTCTGGGGCCAAGCTTTTAGAAAGCTCTCAGAGCTGGCTCGGTGCTTCCACGTCAACTTTAGCCGaatttactTTACCGAGCAACCCTGATAATGTTAGTAACTTGGAGGACAGGGCTTGGACGAAAGCGCTTCAAGAGTCGAAGAGCTTGAACTCGAAATGGACCCAAGACGATTTGGTCACAGCGATCGAACTCGTCCGCGGGGGCATCCCCATCAAGCCCGCCGCGGAGAGGTGCGCCATTCCCGTGATGACCCTCTGGAGAAGGACGAAGGCTCTGGGAATGttATTGTATTTTGTAGATATCCCGGTGTATTTTATGCGTCTTCGAACTCCTAACTGGACTCACGCTCAACTGACGGAAGCTATTCAAGCGGTTGTGACGCAAAGAATGCGTTTCACTCAGGCGGCCTCGCGCTACGGGATACCGAAGGGAACTCTTTATGATCATATACTTGGGAAAACAAAGCGAATGCTCGTTTTGGAGGAAGCCGGCCTGACGCCGACCGAGGAAAACGCGGTGTTGGAATTCTGTTGTCAGATCTCAGTATCTCCCTTCAACAGGAGAACGCAGAAACCCCTCTCgaagatattgaaatttgtcGAGGGCATAAGGCAGAAACGCGATCCGAATTTTAGGTTTACAGGACTCTCGGGCTTTAGGTGGTGGTGGGCTTTCTGTAAAAAACACAGCATCGTGTCCCTATATTTCCAAACGCGACCGACCGAATGA
- Protein Sequence
- MPLSSPPASLLFLLYGVSASNRCTPLPFRPSGAKLLESSQSWLGASTSTLAEFTLPSNPDNVSNLEDRAWTKALQESKSLNSKWTQDDLVTAIELVRGGIPIKPAAERCAIPVMTLWRRTKALGMLLYFVDIPVYFMRLRTPNWTHAQLTEAIQAVVTQRMRFTQAASRYGIPKGTLYDHILGKTKRMLVLEEAGLTPTEENAVLEFCCQISVSPFNRRTQKPLSKILKFVEGIRQKRDPNFRFTGLSGFRWWWAFCKKHSIVSLYFQTRPTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164832;
- 90% Identity
- -
- 80% Identity
- -