Pser006174.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- -
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000036.1:4838569-4842327[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0001 0.18 11.0 0.0 1 38 74 110 74 118 0.89 2 2 5.6e-11 9.6e-08 31.1 0.0 3 35 142 175 140 183 0.89
Sequence Information
- Coding Sequence
- ATGGCATGCTACCCCTCGCTTGTTGAAGATGCCTTGATTGGTGGGGGAACGTGGGATGATGAGGCTAAGCTATTAGAAAGCTCTCATGGCTGGCTCGGTGCTTCCACTTCTACTTTAGCCGacCATTCTTTAGCTTACAATAACGATGTAGTGGTTAGCGCCGGACAAAAGGCTTGGATGAAAGCGCTGCAGGAATCGAAAAGCCTGAACTCTAAATGGACGCAGGATGATTTGGTGACGGCGCTAGAACTTGTTCGCGGGGGTACCCCGATCAAACCTGCCGCCGAGCGCTGCGCCATTCCCGTCATGACCCTGTGGAGAAGGACAAAGGCCCTGGGGATGGTCAGCAGCAGGGCCGCACACGGGAGAAGCGCCAATCTTCCTGGGTGTTTTATGCGTCTGCGAACTCCCACTTGGACCCAAGCTCAACTGAAAGAAGCCATCCAGGCGGTCGTGACGCAGAGAATGCGGTTCACGCAGGCGGCTACCCGCTACGGGATACCCAAAGGAACGCTTTATGACAATATTTTAGGGAAAACTAAACGAATGCTCGTGTTGGAGGAGGCCGGTCTCTCGACTACAGAAGAAAACGCGGTTTTGGACTTTTGCTGTCAGATTTCGGTGTCCCCCTACAACAGAAGAACTCAAAAACCTCTGTGGTCCATACTGTCGTTCGTCGAAGGCATTCGACAGAAACGGGATCCCCATTTTAGGTTCACAACACTGTCGGGTTTCAGGTGGTGGTGGGCCTTCTGCAAGAAACACAGCATCGTCTCTTTGTACTTCGAGACGAGGCCCGACAAGTAG
- Protein Sequence
- MACYPSLVEDALIGGGTWDDEAKLLESSHGWLGASTSTLADHSLAYNNDVVVSAGQKAWMKALQESKSLNSKWTQDDLVTALELVRGGTPIKPAAERCAIPVMTLWRRTKALGMVSSRAAHGRSANLPGCFMRLRTPTWTQAQLKEAIQAVVTQRMRFTQAATRYGIPKGTLYDNILGKTKRMLVLEEAGLSTTEENAVLDFCCQISVSPYNRRTQKPLWSILSFVEGIRQKRDPHFRFTTLSGFRWWWAFCKKHSIVSLYFETRPDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164832;
- 90% Identity
- -
- 80% Identity
- -