Ccol008438.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- -
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000012.1:591491-594252[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0001 0.22 11.2 0.0 1 39 126 163 126 169 0.89 2 2 1.9e-11 4e-08 32.7 0.0 1 35 183 218 183 226 0.90
Sequence Information
- Coding Sequence
- ATGGAAAGTGGAACTAAGTTTGCGGGTTTTTTTCAGTCCTTTCTTGGGGAGCGTCCCTTGCCTTGGAAGAGGGGGGTTGGTGCCGGGAACAAGAGTCAGATAGCTTACATACCCAATTTGTTTAGAGATCAGGCTGATCGCGGAAAATTCATTTATTCGTCATCACCTCCCCGCCTCCTCTCCCCTTTAGGAGGCAAGAATTTGTCAGAAAGACGGACGGCCAAGCTCTTAGAAAGCTCTCATGGCTGGCTCGGTGCTTCCACCTCCACTTTAGCCGAATATTCTTTATCAAACAGTCCTGATTATGTAAATAGCGCCGAGGAAAGAGCTTGGACGAAAGCGCTACAAGAATCGAAAAGTTTGAACTCGAAATGGACTCAGGACGATCTGGTGACGGCCATCGAGCTCGTCCGCGGCGGTACTCCCATCAAACCCGCCGCGGAGAGATGCGCCATTCCCGTGATGACTCTCTGGAGACGGACGAAGGCGCTGGGAATGGTCAGCAATCTTCCGGTGTATTTTATGCGCCTGCGAACTCCCAATTGGACTCGGGCTCAACTGAATGAAGCAATTGATGCGGTCGTGACGCAGCGAATGCGATTCACGCAGGCAGCCTCTCGCTACGGAATACCCAAAGGAACGCTTTATGACAATATCTTAGGGAAGACGAAGCGAATGGTCGTCCTGGAGGAAGCCGGCCTCACGCCGACGGAGGAAAACGCGGTCCTGGAATTCTGTTGTCAGATCTCCGTGTCGCCGTTCAATCGACGAACCCAGAAGCCTCTCTCTTCCGTGTTGAACTTTGTCGAGAGCTTACGACAGAAGCGAGATCCCGATTTCAGGTTCACGGGCTTGGGAGGGTTCAGGTGGTGGTGGGCGTTCTGCAAGAAGCATAGCATCGTGTCTCTGTATTTTGAGACGAAGCCGGATGCTTGA
- Protein Sequence
- MESGTKFAGFFQSFLGERPLPWKRGVGAGNKSQIAYIPNLFRDQADRGKFIYSSSPPRLLSPLGGKNLSERRTAKLLESSHGWLGASTSTLAEYSLSNSPDYVNSAEERAWTKALQESKSLNSKWTQDDLVTAIELVRGGTPIKPAAERCAIPVMTLWRRTKALGMVSNLPVYFMRLRTPNWTRAQLNEAIDAVVTQRMRFTQAASRYGIPKGTLYDNILGKTKRMVVLEEAGLTPTEENAVLEFCCQISVSPFNRRTQKPLSSVLNFVESLRQKRDPDFRFTGLGGFRWWWAFCKKHSIVSLYFETKPDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164832;
- 90% Identity
- -
- 80% Identity
- -