Phum002517.1
Basic Information
- Insect
- Pediculus humanus
- Gene Symbol
- bab1
- Assembly
- GCA_000006295.1
- Location
- NW:403728-405542[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-17 1.7e-14 52.5 0.0 1 43 28 71 28 73 0.95 2 2 0.63 9.7e+02 -1.1 0.2 7 15 146 154 145 158 0.84
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGTTGGAACACAAATCAAAGTCTCGTACATAATTTGAGATTTCGCGAAAGAGGACCATTGAAATCATGGCGACCGGAAACAATGGCGGAAgcaattttttccgttttaaaagaAGGCTTGAGTTTGTCACAGGCGGCGAGAAAATTCGACATTCCTTATCCGACGTTTGTTTTATACGCGAACAGAGTTCACAACATGTTGGGACCCAGCGCAGACGGGGGTGCCGATTTGCGACCCAAGGGAAGAGGAAGACCACAAAGAATTCTTCTGGGTGTTTGGCCAGACGAACACATTCGAGGCGTCATACGAGCCGTCGTTTTTAGGGATCCTCAACATATGAAAGAAGAACAACATTTAGGATTTCCAAGACTTCCGGATTCGCCATATTTAGGAAACGCTTGCGGTAACAATCCGGATCCGACTGCCGCCATTGCTGCCGTAGCACACGGTCTTCGTCAGCAAATGTGCAACATGGTAGCAGCTGCTCATCATCACGGAGATGCCGGATTAGTGAATAGTTTGAATCTGTTGAGTCACTGCAATAATTTGGGACTCCCAACGAACGGCATGAGGTTAAACAGTCCTTTAGGTTCCGCTCACGATTTGAGAATCAACAGTCCGGGTTCGAGAGACATTGACCTTTCACCGGGTTCATCACCGTGCAATCCTCTAGACGGTTGCGCCGTTAATCtatcaacaacaaacgttaattgtaaaacggaaatgaaggGATCCCTTCGATCGTCGGATTCTAAATCCCCTCCCGGAATGGCGGATGATTACGAAGTCAATTTATCAACTCGTCACTTATCAAAATCACCCTCGGACGATTACGACGACATTGAAGATTTGGTAAGGAGTTCACCGAGGGGGAGTGGGGGAGGACTCGTCGTCGAACCTTCGGAAGGTGTTGTCGTAGTACGAGATACATCAATGCCATTAAAAGTAGAAATAACGGAATGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDPQHMKEEQHLGFPRLPDSPYLGNACGNNPDPTAAIAAVAHGLRQQMCNMVAAAHHHGDAGLVNSLNLLSHCNNLGLPTNGMRLNSPLGSAHDLRINSPGSRDIDLSPGSSPCNPLDGCAVNLSTTNVNCKTEMKGSLRSSDSKSPPGMADDYEVNLSTRHLSKSPSDDYDDIEDLVRSSPRGSGGGLVVEPSEGVVVVRDTSMPLKVEITE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01307950; iTF_01308614; iTF_01250998; iTF_00362463;
- 90% Identity
- -
- 80% Identity
- -