Pser006175.1
Basic Information
- Insect
- Polyplax serrata
- Gene Symbol
- bab1_1
- Assembly
- GCA_037055365.1
- Location
- JAWJWE010000036.1:4851917-4853509[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1e-17 1.8e-14 52.6 0.0 1 43 28 71 28 73 0.95 2 2 3.5 6e+03 -3.5 1.0 6 13 146 153 146 157 0.79
Sequence Information
- Coding Sequence
- ATGTGGCAGAAATGTTGGAACACGAACCAAAGCCTCGTACACAACTTGCGGTTCAGAGAGAGAGGACCCCTCAAATCGTGGAGACCGGAGACCATGGCCGAAGCCATCTTTTCCGTTCTCAAGGAAGGCCTCAGCCTCTCACAGGCGGCGAGGAAATTCGACATTCCTTACCCGACATTTGTGCTTTATGCTAACCGAGTTCACAATATGCTGGGACCCAGCGCAGACGGTGGAGCAGACCTACGGCCCAAAGGAAGAGGAAGGCCTCAAAGAATCCTTCTAGGAGTTTGGCCAGATGAACATATTCGTGGAGTGATACGCGCCGTCGTTTTCAGAGACCCCCAACACATGAAAGATGACCAGCATTTAGGATTTCCAAGGATTCCGGACACGTCATATTTAGGAAACGCATGTGGAAATAATCCGGACCCAAGCCAAGCTGCCATTGCTGCCGTGGCCGTGGCCGGACTCAGACAGCAAGTGTGCAACATGGTAGCAGCCGCTCATCACCACGGAGACACCGGATTCGTCAATAGTCTGAATCTGCTAAGCCATTGCAATAATTTGGGACTTCCGACCAACGGAATAAGGCTCAACAGTCCCTTAGGCTCGGCACACGACTTGAGGATCAACAGTCCAGGCTCCAGAGAAGTCGACCTGTCACCGGCGTCGTCTCCCTGCAACCCGTTGGACGGGTGTGCCGTCAACCTTTCCACGACCAACGTCAACTGCAAGTCGGAAACGAAACCTGCCGTTCGGTCCGATTCAAAGTCCCCACCGACAGAAGACTACGAGGTCAACCTGTCGACTCGTCACCTTTCCAAATCTCCCTCGGAGGAATACGACGACATAGACGACCTGGTGCGAAGTCCCAGAGGCCTGGAAACCTCCGAGACTGTCGTCAGAGATACTTCTATGCCATTGAAAGTAGAAATAACCGAGTGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDPQHMKDDQHLGFPRIPDTSYLGNACGNNPDPSQAAIAAVAVAGLRQQVCNMVAAAHHHGDTGFVNSLNLLSHCNNLGLPTNGIRLNSPLGSAHDLRINSPGSREVDLSPASSPCNPLDGCAVNLSTTNVNCKSETKPAVRSDSKSPPTEDYEVNLSTRHLSKSPSEEYDDIDDLVRSPRGLETSETVVRDTSMPLKVEITE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164830;
- 90% Identity
- iTF_00362463;
- 80% Identity
- -