Ccol008138.1
Basic Information
- Insect
- Columbicola columbae
- Gene Symbol
- bab1
- Assembly
- GCA_016920875.1
- Location
- JADMLL010000012.1:583465-584660[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.2e-17 2.5e-14 52.6 0.0 1 43 28 71 28 73 0.95 2 2 0.63 1.3e+03 -0.9 0.1 6 15 145 154 144 158 0.85
Sequence Information
- Coding Sequence
- ATGTGGCAAAAATGTTGGAACACGAACCAAAGCCTCGTCCACAATTTGCGGTTTCGTGAAAGGGGACCGTTGAAGTCGTGGCGACCGGAAACGATGGCGGAAGCGATATTTTCCGTTCTCAAGGAAGGATTGAGCCTGTCTCAGGCGGCTAGGAAGTTCGACATTCCCTACCCGACTTTCGTGCTGTATGCTAATCGAGTTCATAACATGCTGGGGCCTAGTGCGGATGGAGGAGCAGACCTGCGACCCAAAGGAAGAGGAAGACCACAGAGAATCCTTCTGGGAGTATGGCCTGATGAACATATCCGAGGTGTGATTCGTGCTGTTGTCTTCAGAGATCCACAACATATGAAGGAGGATCAGCATTTAGGATTTCCAAGGCTGCCAGATACGCCGTACCTAGGAAACGCGTGCGGTAACAACCCAGATACGACAGCGGCCATCGCTGCAGTGGCGCACGGTCTCCGTCAGCAAATGTGCAACATGGTCGCGGCTGCTCATCACCATGGAGACACCGGCTTGGTAAACAGTCTGAACCTTCTAAGCCATTGCAATAATCTGGGACTGCCGACGAACGGAATAAGGCTCAACAGTCCCTTAGGGTCTGCACACGACCTTAGAATGAACAGTCCAGGTTCTAGAGACGTGGATTTGTCTCCGGCTTCGTCTCCATGCAATCCTCTCGATGGCTGCGCAGTCAACCTCTCGACCACCAATGTCAACTGTAAAACAGAAAGCAAACCTGCGGTACGCCCCGAGTCAAAAACACCTCCTACGGAGGACTATGAGGTCAACCTCTCAACTCGTCACCTCTCCAAGTCACCTTCGGACGAATACGACGACATCGACGACTTAGTCCACAGTCCCCGCGGACTCGATGCCTCGGAAGGCGTCGTAAGAGATACATCTATGCCATTGAAAGTAGAGATAACCGAGTGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDPQHMKEDQHLGFPRLPDTPYLGNACGNNPDTTAAIAAVAHGLRQQMCNMVAAAHHHGDTGLVNSLNLLSHCNNLGLPTNGIRLNSPLGSAHDLRMNSPGSRDVDLSPASSPCNPLDGCAVNLSTTNVNCKTESKPAVRPESKTPPTEDYEVNLSTRHLSKSPSDEYDDIDDLVHSPRGLDASEGVVRDTSMPLKVEITE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164830;
- 90% Identity
- iTF_01250998;
- 80% Identity
- -