Rarc012786.1
Basic Information
- Insect
- Ricinus arcuatus
- Gene Symbol
- bab1
- Assembly
- GCA_027475445.1
- Location
- JAOXJT010000006.1:74550-77106[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-17 6.4e-14 52.6 0.0 1 43 28 71 28 73 0.95 2 2 0.91 4.3e+03 -1.3 0.2 7 15 146 154 145 158 0.84
Sequence Information
- Coding Sequence
- ATGTGGCAGAAATGCTGGAACACGAACCAGAGTTTGGTGCACAATCTGCGGTTCAGAGAGCGGGGGCCCCTCAAATCCTGGCGCCCCGAAACGATGGCCGAGGCAATATTCTCCGTGCTGAAAGAGGGGCTGAGCCTGTCGCAGGCCGCGAGAAAATTCGACATTCCTTATCCCACCTTCGTGCTTTACGCTAACCGAGTTCACAACATGCTGGGGCCAAGCGCGGATGGAGGAGCAGATCTGCGCCCGAAAGGCAGAGGACGACCGCAGAGAATACTTCTGGGCGTCTGGCCCGATGATCACATCCGAGGTGTCATACGAGCTGTTGTGTTCAGGGATCCGCAGCACATGAAGGAAGATCAAAGCTTAGGATTTCCCCGTTTACCGGACACTCCCTATTTAGGAAACACATGCGGTAACACCCCCGATCCCTCGGCCGCCATAGCCGCCGTGGCGCACGGACTCCGACAGCAAATGTGCAACATGGTCGCCGCAGCGCATCACCACGGAGACACGGGACTCGTAAACAGTTTAAACCTTCTCAGCCATTGCAACAGCCTGGGGATACCGACGAACGGAATAAGGCTCAACAGTCCCCTGGGCTCCGCGCACGATCTGCGAATCAACAGTCCGGGTTCGAGAGAAATAGACTTGTCGCCGGCTTCGTCCCCGTGCAATCAGGGAGTTGGCTGCGCGGTGAATCTCTCGACGACGAGCGTGACCTGCAGGACGGATAGCAAGACGGAGGCTGCGGCCGGGGTGCCCCCGCGGTCGGATTCGAAATCGCCCCCGACGGAGGATTACGAAGTGAACCTATCGACGCGCCACTTATCAAAGTCGCCGTGCGACGAGATAGACGACATCGACGATCTCGTCCGCAGTCCTCGAGGACTAGAAAGTGCTGACGGCATCGTCAGGGAAAATCCGATGCCGGTCAAAGTAGAAATAACCGAGTGA
- Protein Sequence
- MWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKFDIPYPTFVLYANRVHNMLGPSADGGADLRPKGRGRPQRILLGVWPDDHIRGVIRAVVFRDPQHMKEDQSLGFPRLPDTPYLGNTCGNTPDPSAAIAAVAHGLRQQMCNMVAAAHHHGDTGLVNSLNLLSHCNSLGIPTNGIRLNSPLGSAHDLRINSPGSREIDLSPASSPCNQGVGCAVNLSTTSVTCRTDSKTEAAAGVPPRSDSKSPPTEDYEVNLSTRHLSKSPCDEIDDIDDLVRSPRGLESADGIVRENPMPVKVEITE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01164830;
- 90% Identity
- iTF_01308614;
- 80% Identity
- iTF_01308614;