Psmi052097.1
Basic Information
- Insect
- Parnassius smintheus
- Gene Symbol
- -
- Assembly
- GCA_036936625.1
- Location
- JAUPFT010000019.1:33072647-33073081[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.9e-09 8e-07 30.9 0.0 3 40 16 53 14 58 0.89 2 2 7.4 2e+03 0.8 0.0 13 23 127 137 125 137 0.83
Sequence Information
- Coding Sequence
- ATGGAACCTTCGCAAAAAAGAAAACGGGGCTCAGGATGGTCTCAAACTGATCTTCAGAATGCTCTAGATGATATAAAAAACAACCAAATGTCTGAGCGTGCAGCagctttaaaatacaatataccTCGGCGAACGTTgaaaaatcacataaaatctgGAAGCGTGGTGAAGAGGATGGGAAGAAAAGCTGTTTTTACCGACACACAGGAAAAGGAATTAGTAGAGAGAATTAAGAAGTTTTCTTGTATAGGGATGCCTTTGACACCAAAAATAATACGTAAACAAGCTTACTTATTTTGTGAaagaaataatatacaaaatcccTTTAGTGACAAAAAATTGACTGCTGGCAAGAAATGGCTTAACAATTTCCTCGCACGAAATAAAGACATATCTCAACGTAAAGCACAATTCATGAACCCTGCGAGGGCTTAG
- Protein Sequence
- MEPSQKRKRGSGWSQTDLQNALDDIKNNQMSERAAALKYNIPRRTLKNHIKSGSVVKRMGRKAVFTDTQEKELVERIKKFSCIGMPLTPKIIRKQAYLFCERNNIQNPFSDKKLTAGKKWLNNFLARNKDISQRKAQFMNPARA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01436958;
- 90% Identity
- iTF_01157648;
- 80% Identity
- -