Porl045616.1
Basic Information
- Insect
- Parnassius orleans
- Gene Symbol
- -
- Assembly
- GCA_029286625.1
- Location
- JAGSMP010000250.1:877093-877491[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-09 1.8e-06 29.6 0.0 3 40 16 53 14 58 0.89
Sequence Information
- Coding Sequence
- ATGGAACCTTCGCTAAAAAGAAAACGGGGCTCAGGATGGTCTCAAACTGATCTTCAGGATGCTCTAGATGATATAAAAAACAACCAAATGTCTGAGCGTGCAGCAgctctaaaatacaatatacCACGGCAAACCTtgaaaaatcacataaaatctGGAAGCGTGGTGAAGAGGATGGGAAGAAAAGCTGTTTTTACCGACACACAGGAAAAGGAATTGGTAGAGAGAATTAAGAAGTTTTCAAACATAGGCATACCTTTAACACCAAAAATAATACGTAAACAAGCGTACTTATTTTGTGaaagaaacaatataaaaaatccaTTTAGTGATAAAAAATCGATTGCTGGCAAGAAATGGCTTAAAAATTTCCTCGCGCGAAATAAAGACATATCTTAA
- Protein Sequence
- MEPSLKRKRGSGWSQTDLQDALDDIKNNQMSERAAALKYNIPRQTLKNHIKSGSVVKRMGRKAVFTDTQEKELVERIKKFSNIGIPLTPKIIRKQAYLFCERNNIKNPFSDKKSIAGKKWLKNFLARNKDIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01436958;
- 90% Identity
- iTF_01156300; iTF_01158717; iTF_01153842;
- 80% Identity
- -