Papo000776.1
Basic Information
- Insect
- Parnassius apollo
- Gene Symbol
- -
- Assembly
- GCA_907164705.1
- Location
- CAJQZP010000031.1:5020711-5021196[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-09 3e-07 30.7 0.0 3 40 16 53 14 58 0.89 2 2 4 7.2e+02 0.6 0.0 13 23 127 137 125 137 0.83
Sequence Information
- Coding Sequence
- ATGGAACCTTCGCAAAAAAGAAAACGGGGCTCAGGATGGTCTCAAACTGATCTTCAGAATGCTCTAGATGATATAAAAAACAACCAAATGTCTGAGCGTGCAGCagctttaaaatacaatataccACGGCGAACGTTGAAAAATCACATAAAATCTGGAAGCGTGGTGAAGAGGATAGGAAGAAAAGCTGTTTTTACCGACACACAGGAAAAGGAATTAGTAGAGAGAATTAAGAAGTTTTCAAGTATAGGCATGCCTTTGACACCAAAAATAATACGTAAACAAGCTTACTTATTTTGTGAaagaaataatatacaaaatcccTTTAGTGACAAAAAATTGACTGCTGGCAAGAAATGGCTTAACAATTTCCTCGCACGAAATAAAGACATATCTCAACGTAAAGCACAATTCATGAACCCTGCGAGGGCTCAGAAATTAAATAAGCATATAGTTGACAAACATTTCAAAGCTAAGCAAAGCtga
- Protein Sequence
- MEPSQKRKRGSGWSQTDLQNALDDIKNNQMSERAAALKYNIPRRTLKNHIKSGSVVKRIGRKAVFTDTQEKELVERIKKFSSIGMPLTPKIIRKQAYLFCERNNIQNPFSDKKLTAGKKWLNNFLARNKDISQRKAQFMNPARAQKLNKHIVDKHFKAKQS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01436958;
- 90% Identity
- iTF_01157648;
- 80% Identity
- -